Triple

T4162197
Position Surface form Disambiguated ID Type / Status
Subject Arabidopsis thaliana E91554 entity
Predicate hasReferenceAccession P53608 FINISHED
Object Col-0
Col-0 is the standard laboratory reference strain (ecotype) of the model plant Arabidopsis thaliana, widely used in plant genetics and molecular biology research.
E91554 NE FINISHED

How this triple was built (5 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Col-0 | Statement: [Arabidopsis thaliana, hasReferenceAccession, Col-0]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Col-0
Context triple: [Arabidopsis thaliana, hasReferenceAccession, Col-0]
  • A. Arabidopsis thaliana
    Arabidopsis thaliana is a small flowering plant in the mustard family widely used as a model organism in plant biology and genetics.
  • B. Pisum
    Pisum is a small genus of flowering legume plants best known for the garden pea, a key model organism in genetics and an important food crop.
  • C. Medicago
    Medicago is a genus of leguminous plants best known for species like alfalfa, which are widely cultivated as high-protein forage crops and for soil improvement through nitrogen fixation.
  • D. Glycine max
    Glycine max is the cultivated soybean plant, a major legume crop grown worldwide for its protein- and oil-rich seeds used in food, feed, and industrial products.
  • E. Cotton Caligula A.ix
    Cotton Caligula A.ix is a medieval manuscript in the British Library that preserves one of the principal surviving copies of the Middle English poem "The Owl and the Nightingale."
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Col-0
Triple: [Arabidopsis thaliana, hasReferenceAccession, Col-0]
Generated description
Col-0 is the standard laboratory reference strain (ecotype) of the model plant Arabidopsis thaliana, widely used in plant genetics and molecular biology research.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Col-0
Target entity description: Col-0 is the standard laboratory reference strain (ecotype) of the model plant Arabidopsis thaliana, widely used in plant genetics and molecular biology research.
  • A. Arabidopsis thaliana chosen
    Arabidopsis thaliana is a small flowering plant in the mustard family widely used as a model organism in plant biology and genetics.
  • B. Pisum
    Pisum is a small genus of flowering legume plants best known for the garden pea, a key model organism in genetics and an important food crop.
  • C. Medicago
    Medicago is a genus of leguminous plants best known for species like alfalfa, which are widely cultivated as high-protein forage crops and for soil improvement through nitrogen fixation.
  • D. Glycine max
    Glycine max is the cultivated soybean plant, a major legume crop grown worldwide for its protein- and oil-rich seeds used in food, feed, and industrial products.
  • E. Cotton Caligula A.ix
    Cotton Caligula A.ix is a medieval manuscript in the British Library that preserves one of the principal surviving copies of the Middle English poem "The Owl and the Nightingale."
  • F. None of above.
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: hasReferenceAccession
Context triple: [Arabidopsis thaliana, hasReferenceAccession, Col-0]
  • A. hasReferenceID chosen
    Indicates that an entity is associated with a specific reference identifier used to uniquely track or distinguish it.
  • B. requiresForAccession
    Indicates that one entity must be obtained, completed, or satisfied before another entity can be accessed, entered, or formally joined.
  • C. EUAccession
    Indicates that an entity becomes a member state of the European Union through the formal accession process.
  • D. hasReferenceWork
    Indicates that one entity is associated with a reference work (such as a dictionary, encyclopedia, or manual) that provides authoritative information about it.
  • E. accessionType
    Indicates the manner or category by which something is acquired, added, or admitted into a collection, system, or status.
  • F. None of above.

Provenance (6 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69aed9626ebc8190a39de631788bea3e completed March 9, 2026, 2:29 p.m.
NER Named-entity recognition batch_69af0321eee88190871c1d4bf44a5007 completed March 9, 2026, 5:28 p.m.
NED1 Entity disambiguation (via context triple) batch_69b57f456bf88190b9b8678476ac3803 completed March 14, 2026, 3:31 p.m.
NEDg Description generation batch_69b57fe89ed0819089d7e56568755b1c completed March 14, 2026, 3:34 p.m.
NED2 Entity disambiguation (via description) batch_69b5805cb7e88190b2f6ed6a18de9319 completed March 14, 2026, 3:35 p.m.
PD Predicate disambiguation batch_69af018dc90c8190a754b1bfbc802e80 completed March 9, 2026, 5:21 p.m.
Created at: March 9, 2026, 3:44 p.m.