Triple
T28859099
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Monocercomonoides |
E728811
|
entity |
| Predicate | biosyntheticPathway |
P165669
|
FINISHED |
| Object | cytosolic synthesis of iron–sulfur proteins |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: cytosolic synthesis of iron–sulfur proteins | Statement: [Monocercomonoides, biosyntheticPathway, cytosolic synthesis of iron–sulfur proteins]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: biosyntheticPathway Context triple: [Monocercomonoides, biosyntheticPathway, cytosolic synthesis of iron–sulfur proteins]
-
A.
isBiosynthesizedFrom
Indicates that one substance is produced through a biological synthesis process using another substance as its precursor or starting material.
-
B.
regulatoryPathway
Indicates that one entity is part of, or participates in, a biological or organizational regulatory pathway that controls the activity, expression, or behavior of another.
-
C.
carbonFixationPathway
Indicates that one entity is involved in, or associated with, the biochemical pathway by which inorganic carbon (e.g., CO₂) is converted into organic compounds.
-
D.
isSynthesizedByEnzyme
Indicates that a substance or molecule is produced or formed through the catalytic action of a specific enzyme.
-
E.
secondaryMetabolite
Indicates that one entity is a secondary metabolite produced by, associated with, or derived from another entity (such as an organism, pathway, or gene).
- F. None of above. chosen
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69f031a01cbc8190ba87270bb6fe4639 |
completed | April 28, 2026, 4:03 a.m. |
| NER | Named-entity recognition | batch_69f65a14eaa081908113d246dbaf86dd |
completed | May 2, 2026, 8:09 p.m. |
| PD | Predicate disambiguation | batch_69f65762b5e481908a30ca963dcba4be |
completed | May 2, 2026, 7:58 p.m. |
| PDg | Predicate description generation | batch_69f658ebeca4819096beb3f98f73fe31 |
completed | May 2, 2026, 8:05 p.m. |
Created at: April 28, 2026, 6:46 a.m.