Triple
T23473105
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | BioSample database |
E570179
|
entity |
| Predicate | associatedWith |
P37
|
FINISHED |
| Object | dbGaP |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: dbGaP | Statement: [BioSample database, associatedWith, dbGaP]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: dbGaP Context triple: [BioSample database, associatedWith, dbGaP]
-
A.
dbGaP
chosen
dbGaP (the Database of Genotypes and Phenotypes) is a National Institutes of Health (NIH) repository that archives and distributes data from studies investigating the interaction of genotype and phenotype in humans.
-
B.
Genetic Testing Registry
The Genetic Testing Registry is an NIH-maintained public resource that provides detailed information about genetic tests, their purposes, methodologies, and associated conditions.
-
C.
GEO DataSets
GEO DataSets is a public NCBI repository that organizes and provides access to curated gene expression and other functional genomics experiment data.
-
D.
BioSample database
The BioSample database is an NCBI repository that stores and organizes metadata about biological samples used in genomic and other molecular research studies.
-
E.
Gene Expression Omnibus
Gene Expression Omnibus is a public NCBI repository that archives and freely distributes high-throughput gene expression and other functional genomics data submitted by the research community.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e245af8a88819084f2704f6d265a92 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a70244208190bbd8f58ac16d4399 |
completed | April 29, 2026, 6:36 a.m. |
Created at: April 17, 2026, 5:58 p.m.