Triple
T23473091
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | BioSample database |
E570179
|
entity |
| Predicate | partOf |
P40
|
FINISHED |
| Object | NCBI resources |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI resources | Statement: [BioSample database, partOf, NCBI resources]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: NCBI resources Context triple: [BioSample database, partOf, NCBI resources]
-
A.
NCBI databases
chosen
NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
-
B.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
C.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
D.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
-
E.
NCBI Bookshelf
NCBI Bookshelf is a free online resource from the National Center for Biotechnology Information that provides access to a wide range of biomedical books, reports, and other full-text scholarly literature.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e245af8a88819084f2704f6d265a92 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a70244208190bbd8f58ac16d4399 |
completed | April 29, 2026, 6:36 a.m. |
Created at: April 17, 2026, 5:58 p.m.