Triple
T23473062
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | PubChem Substance |
E570178
|
entity |
| Predicate | linkedTo |
P37
|
FINISHED |
| Object | PubChem BioAssay |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: PubChem BioAssay | Statement: [PubChem Substance, linkedTo, PubChem BioAssay]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: PubChem BioAssay Context triple: [PubChem Substance, linkedTo, PubChem BioAssay]
-
A.
PubChem BioAssay
chosen
PubChem BioAssay is a public database of biological activity results from high-throughput screening and other assays, used to link chemical substances with their biological effects.
-
B.
PubChem
PubChem is a free, publicly accessible database maintained by the National Institutes of Health that provides comprehensive information on the biological activities and chemical properties of small molecules and compounds.
-
C.
PubChem Compound
PubChem Compound is a public database record type in the PubChem system that provides detailed chemical information about individual small molecules, including their structures, properties, and biological activities.
-
D.
PubChem Substance
PubChem Substance is a component of the PubChem database that stores detailed records of chemical substances as submitted by various data contributors, including their structures, identifiers, and related information.
-
E.
WebCSD
WebCSD is the web-based interface to the Cambridge Structural Database, allowing users to search, visualize, and analyze crystallographic structures online.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e245af8a88819084f2704f6d265a92 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a70244208190bbd8f58ac16d4399 |
completed | April 29, 2026, 6:36 a.m. |
Created at: April 17, 2026, 5:58 p.m.