Triple
T23473017
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Conserved Domain Database |
E570177
|
entity |
| Predicate | usedBy |
P260
|
FINISHED |
| Object | NCBI CD-Search tool |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI CD-Search tool | Statement: [Conserved Domain Database, usedBy, NCBI CD-Search tool]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: NCBI CD-Search tool Context triple: [Conserved Domain Database, usedBy, NCBI CD-Search tool]
-
A.
TBHits
TBHits is the professional moniker of American record producer and songwriter Tommy Brown, known for his work with major pop and R&B artists.
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
BLAST
BLAST is a widely used bioinformatics tool for comparing biological sequences, such as DNA, RNA, or proteins, to sequence databases to identify similarities and infer functional or evolutionary relationships.
-
D.
BLAST
BLAST was the short-lived but influential literary and art magazine that served as the principal mouthpiece of the Vorticist movement in early 20th-century Britain.
-
E.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: NCBI CD-Search tool Target entity description: NCBI CD-Search tool is an online resource that identifies and annotates conserved protein domains in query sequences by comparing them against NCBI’s curated domain databases.
-
A.
TBHits
TBHits is the professional moniker of American record producer and songwriter Tommy Brown, known for his work with major pop and R&B artists.
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
BLAST
BLAST is a widely used bioinformatics tool for comparing biological sequences, such as DNA, RNA, or proteins, to sequence databases to identify similarities and infer functional or evolutionary relationships.
-
D.
BLAST
BLAST was the short-lived but influential literary and art magazine that served as the principal mouthpiece of the Vorticist movement in early 20th-century Britain.
-
E.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e245af8a88819084f2704f6d265a92 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a70244208190bbd8f58ac16d4399 |
completed | April 29, 2026, 6:36 a.m. |
Created at: April 17, 2026, 5:57 p.m.