Triple

T23473017
Position Surface form Disambiguated ID Type / Status
Subject Conserved Domain Database E570177 entity
Predicate usedBy P260 FINISHED
Object NCBI CD-Search tool NE NERFINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI CD-Search tool | Statement: [Conserved Domain Database, usedBy, NCBI CD-Search tool]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: NCBI CD-Search tool
Context triple: [Conserved Domain Database, usedBy, NCBI CD-Search tool]
  • A. TBHits
    TBHits is the professional moniker of American record producer and songwriter Tommy Brown, known for his work with major pop and R&B artists.
  • B. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • C. BLAST
    BLAST is a widely used bioinformatics tool for comparing biological sequences, such as DNA, RNA, or proteins, to sequence databases to identify similarities and infer functional or evolutionary relationships.
  • D. BLAST
    BLAST was the short-lived but influential literary and art magazine that served as the principal mouthpiece of the Vorticist movement in early 20th-century Britain.
  • E. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: NCBI CD-Search tool
Target entity description: NCBI CD-Search tool is an online resource that identifies and annotates conserved protein domains in query sequences by comparing them against NCBI’s curated domain databases.
  • A. TBHits
    TBHits is the professional moniker of American record producer and songwriter Tommy Brown, known for his work with major pop and R&B artists.
  • B. NCBI E-utilities API
    The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
  • C. BLAST
    BLAST is a widely used bioinformatics tool for comparing biological sequences, such as DNA, RNA, or proteins, to sequence databases to identify similarities and infer functional or evolutionary relationships.
  • D. BLAST
    BLAST was the short-lived but influential literary and art magazine that served as the principal mouthpiece of the Vorticist movement in early 20th-century Britain.
  • E. GenBank
    GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
  • F. None of above. chosen

Provenance (2 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e245af8a88819084f2704f6d265a92 completed April 17, 2026, 2:37 p.m.
NER Named-entity recognition batch_69f1a70244208190bbd8f58ac16d4399 completed April 29, 2026, 6:36 a.m.
Created at: April 17, 2026, 5:57 p.m.