Triple
T23473011
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Conserved Domain Database |
E570177
|
entity |
| Predicate | includesDataFrom |
P152409
|
FINISHED |
| Object | TIGRFAMs |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: TIGRFAMs | Statement: [Conserved Domain Database, includesDataFrom, TIGRFAMs]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: TIGRFAMs Context triple: [Conserved Domain Database, includesDataFrom, TIGRFAMs]
-
A.
Pfam domains
Pfam domains are conserved protein regions defined in the Pfam database that represent functional and structural units shared across different proteins.
-
B.
Conserved Domain Database
The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
-
C.
TBHits
TBHits is the professional moniker of American record producer and songwriter Tommy Brown, known for his work with major pop and R&B artists.
-
D.
UniProtKB/TrEMBL
UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
-
E.
UniParc
UniParc is a comprehensive, non-redundant archive that stores and tracks all known unique protein sequences from multiple sources over time.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: TIGRFAMs Target entity description: TIGRFAMs is a curated collection of protein families defined by hidden Markov models, used for functional annotation and classification of proteins in genomic and metagenomic data.
-
A.
Pfam domains
Pfam domains are conserved protein regions defined in the Pfam database that represent functional and structural units shared across different proteins.
-
B.
Conserved Domain Database
The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
-
C.
TBHits
TBHits is the professional moniker of American record producer and songwriter Tommy Brown, known for his work with major pop and R&B artists.
-
D.
UniProtKB/TrEMBL
UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
-
E.
UniParc
UniParc is a comprehensive, non-redundant archive that stores and tracks all known unique protein sequences from multiple sources over time.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e245af8a88819084f2704f6d265a92 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a70244208190bbd8f58ac16d4399 |
completed | April 29, 2026, 6:36 a.m. |
Created at: April 17, 2026, 5:57 p.m.