Triple
T23467062
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | ClinVar |
E569124
|
entity |
| Predicate | linkedTo |
P37
|
FINISHED |
| Object | OMIM |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: OMIM | Statement: [ClinVar, linkedTo, OMIM]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: OMIM Context triple: [ClinVar, linkedTo, OMIM]
-
A.
OMIM
chosen
OMIM (Online Mendelian Inheritance in Man) is a comprehensive, curated database of human genes and genetic disorders widely used in medical and genetic research.
-
B.
NCBI MedGen database
The NCBI MedGen database is a curated resource that aggregates information on human medical genetics, including diseases, phenotypes, and related genomic data, to support clinical and research applications.
-
C.
McKusick
McKusick is a surname most notably associated with American jazz saxophonist and clarinetist Hal McKusick.
-
D.
NCBI Gene database
The NCBI Gene database is a comprehensive public resource that provides curated information on genes from multiple organisms, including their sequences, functions, genomic context, and related literature.
-
E.
Genetic and Rare Diseases Information Center
The Genetic and Rare Diseases Information Center is a U.S. government resource that provides reliable, up-to-date information and support to patients, families, and healthcare professionals about genetic and rare conditions.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458ebd808190b3298163132cfb0b |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a6fc35c48190a67614fb4170f15b |
completed | April 29, 2026, 6:36 a.m. |
Created at: April 17, 2026, 5:54 p.m.