Triple
T23467060
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | ClinVar |
E569124
|
entity |
| Predicate | linkedTo |
P37
|
FINISHED |
| Object | dbSNP |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: dbSNP | Statement: [ClinVar, linkedTo, dbSNP]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: dbSNP Context triple: [ClinVar, linkedTo, dbSNP]
-
A.
dbSNP
chosen
dbSNP is a public NCBI database that catalogs single nucleotide polymorphisms and other small genetic variants across diverse organisms for use in genetic and genomic research.
-
B.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
-
C.
Human Genome Variation Society standards
Human Genome Variation Society standards are internationally recognized guidelines for the consistent nomenclature and reporting of genetic sequence variants in human DNA.
-
D.
ClinVar database
The ClinVar database is a public archive that aggregates information about the clinical significance of genetic variants and their relationships to human health.
-
E.
NCBI MedGen database
The NCBI MedGen database is a curated resource that aggregates information on human medical genetics, including diseases, phenotypes, and related genomic data, to support clinical and research applications.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458ebd808190b3298163132cfb0b |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a6fc35c48190a67614fb4170f15b |
completed | April 29, 2026, 6:36 a.m. |
Created at: April 17, 2026, 5:54 p.m.