Triple
T23466744
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Taxonomy Browser |
E569118
|
entity |
| Predicate | integratedWith |
P2830
|
FINISHED |
| Object | NCBI Assembly database |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI Assembly database | Statement: [Taxonomy Browser, integratedWith, NCBI Assembly database]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: NCBI Assembly database Context triple: [Taxonomy Browser, integratedWith, NCBI Assembly database]
-
A.
NCBI databases
NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
-
B.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
-
C.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
-
D.
BioProject database
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
-
E.
Edico Genome
Edico Genome was a biotechnology company specializing in high-speed genomic data analysis through its DRAGEN bio-IT platform and FPGA-based acceleration technology.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: NCBI Assembly database Target entity description: The NCBI Assembly database is a comprehensive resource that stores and organizes genome assembly data for a wide range of organisms, providing access to assembled sequences and their annotations.
-
A.
NCBI databases
chosen
NCBI databases are a collection of publicly accessible biological data resources, including nucleotide and protein sequences, genomes, and literature, maintained by the U.S. National Center for Biotechnology Information.
-
B.
GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
-
C.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
-
D.
BioProject database
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
-
E.
Edico Genome
Edico Genome was a biotechnology company specializing in high-speed genomic data analysis through its DRAGEN bio-IT platform and FPGA-based acceleration technology.
- F. None of above.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458ebd808190b3298163132cfb0b |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a6fc35c48190a67614fb4170f15b |
completed | April 29, 2026, 6:36 a.m. |
Created at: April 17, 2026, 5:54 p.m.