Triple
T23466551
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | BLAST |
E569115
|
entity |
| Predicate | tblastxFor |
P152389
|
FINISHED |
| Object | translated nucleotide vs translated nucleotide |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: translated nucleotide vs translated nucleotide | Statement: [BLAST, tblastxFor, translated nucleotide vs translated nucleotide]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: tblastxFor Context triple: [BLAST, tblastxFor, translated nucleotide vs translated nucleotide]
-
A.
transcriptionMachinerySimilarity
Indicates that two entities share similar components, structure, or function in their transcription machinery.
-
B.
hasOrthologsWith
Indicates that two genes or proteins in different species are orthologous, meaning they originated from a common ancestral gene and typically retain similar functions.
-
C.
targetStrain
Indicates that one entity is the specific strain (e.g., genetic, microbial, or biological variant) that is the focus or objective of another entity’s action, study, or effect.
-
D.
paralogOf
Indicates that two genes or proteins are evolutionarily related as paralogs, having arisen from a duplication event within the same genome.
-
E.
EMBL-EBILocation
Indicates a relationship that specifies the physical or database location information as defined by the EMBL-EBI (European Molecular Biology Laboratory – European Bioinformatics Institute) standards.
- F. None of above. chosen
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458ebd808190b3298163132cfb0b |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1a6faaf8c8190b4fd191c54e1acea |
completed | April 29, 2026, 6:36 a.m. |
| PD | Predicate disambiguation | batch_69f06201d33481909b5fd7b92d03e658 |
completed | April 28, 2026, 7:30 a.m. |
| PDg | Predicate description generation | batch_69f07cbbd7488190ab3c8ae7d0fb68bf |
completed | April 28, 2026, 9:24 a.m. |
Created at: April 17, 2026, 5:54 p.m.