Triple
T22931994
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Protein database |
E569466
|
entity |
| Predicate | hasFullName |
P16
|
FINISHED |
| Object | NCBI Protein database |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI Protein database | Statement: [Protein database, hasFullName, NCBI Protein database]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: NCBI Protein database Context triple: [Protein database, hasFullName, NCBI Protein database]
-
A.
Protein database
chosen
The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
-
B.
Protein Information Resource
Protein Information Resource is a bioinformatics resource center that curates, annotates, and provides access to comprehensive protein sequence and functional information for the scientific community.
-
C.
UniProt Knowledgebase
UniProt Knowledgebase is a comprehensive, curated database that provides detailed information on protein sequences and their functional annotations across numerous species.
-
D.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
E.
UniProt REST API
The UniProt REST API is a web service that allows programmatic access to UniProt’s protein sequence data and annotations for automated retrieval, analysis, and integration into bioinformatics workflows.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458f7d008190901dccbaebeaba24 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1813260608190bb9e1ca704c7e12f |
completed | April 29, 2026, 3:55 a.m. |
Created at: April 17, 2026, 3:44 p.m.