Triple
T22931981
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | GTR Tests database |
E569465
|
entity |
| Predicate | linkedTo |
P37
|
FINISHED |
| Object | NCBI MedGen database |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NCBI MedGen database | Statement: [GTR Tests database, linkedTo, NCBI MedGen database]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: NCBI MedGen database Context triple: [GTR Tests database, linkedTo, NCBI MedGen database]
-
A.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
NCBI Bookshelf
NCBI Bookshelf is a free online resource from the National Center for Biotechnology Information that provides access to a wide range of biomedical books, reports, and other full-text scholarly literature.
-
D.
ClinVar database
The ClinVar database is a public archive that aggregates information about the clinical significance of genetic variants and their relationships to human health.
-
E.
MeSH Browser
MeSH Browser is an online tool provided by the National Library of Medicine for searching and exploring the Medical Subject Headings (MeSH) controlled vocabulary used in biomedical indexing and cataloging.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: NCBI MedGen database Target entity description: The NCBI MedGen database is a curated resource that aggregates information on human medical genetics, including diseases, phenotypes, and related genomic data, to support clinical and research applications.
-
A.
National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
NCBI Bookshelf
NCBI Bookshelf is a free online resource from the National Center for Biotechnology Information that provides access to a wide range of biomedical books, reports, and other full-text scholarly literature.
-
D.
ClinVar database
The ClinVar database is a public archive that aggregates information about the clinical significance of genetic variants and their relationships to human health.
-
E.
MeSH Browser
MeSH Browser is an online tool provided by the National Library of Medicine for searching and exploring the Medical Subject Headings (MeSH) controlled vocabulary used in biomedical indexing and cataloging.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e2458f7d008190901dccbaebeaba24 |
completed | April 17, 2026, 2:37 p.m. |
| NER | Named-entity recognition | batch_69f1813260608190bb9e1ca704c7e12f |
completed | April 29, 2026, 3:55 a.m. |
Created at: April 17, 2026, 3:44 p.m.