Triple
T22871401
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | branaplam |
E567204
|
entity |
| Predicate | affectsGene |
P24557
|
FINISHED |
| Object | SMN2 |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: SMN2 | Statement: [branaplam, affectsGene, SMN2]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: SMN2 Context triple: [branaplam, affectsGene, SMN2]
-
A.
SMN2
chosen
SMN2 is a human gene that produces a backup form of survival motor neuron protein and is a key therapeutic target in spinal muscular atrophy.
-
B.
SMN1 gene
The SMN1 gene is a human gene whose proper function is critical for motor neuron survival, and mutations in it are the primary cause of spinal muscular atrophy.
-
C.
SMN complex
The SMN complex is a multiprotein assembly crucial for the biogenesis of small nuclear ribonucleoproteins (snRNPs) and proper pre-mRNA splicing, with key roles in motor neuron survival.
-
D.
5q13 (SMN1)
5q13 (SMN1) is a gene located on chromosome 5 whose proper function is critical for motor neuron survival and whose mutations are the primary cause of spinal muscular atrophy.
-
E.
SOD1
SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: affectsGene Context triple: [branaplam, affectsGene, SMN2]
-
A.
targetsGene
chosen
Indicates that one entity is directed toward, acts upon, or is intended to affect a specific gene.
-
B.
geneticInfluence
Indicates that one entity affects or contributes to the genetic traits, characteristics, or heredity of another entity.
-
C.
geneticallyLinkedTo
Indicates a relationship where two entities share a genetic connection, such as common ancestry, shared genes, or hereditary association.
-
D.
geneticInteractionWith
Indicates a relationship where the genetic variation or function of one entity affects, modifies, or depends on the genetic variation or function of another entity.
-
E.
hasGene
Indicates that an entity possesses or contains a specific gene as part of its genetic makeup.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e24589d8348190b96422d13a678bc1 |
completed | April 17, 2026, 2:36 p.m. |
| NER | Named-entity recognition | batch_69f17f05c688819097ba3d24ea8e52f5 |
completed | April 29, 2026, 3:46 a.m. |
| PD | Predicate disambiguation | batch_69eed2d8c0608190afef4c4e530c0e2c |
completed | April 27, 2026, 3:07 a.m. |
Created at: April 17, 2026, 3:38 p.m.