Triple

T22693224
Position Surface form Disambiguated ID Type / Status
Subject TDP-43 proteinopathy E561103 entity
Predicate associatedWithDisease P37 FINISHED
Object inclusion body myopathy with Paget disease and frontotemporal dementia NE NERFINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: inclusion body myopathy with Paget disease and frontotemporal dementia | Statement: [TDP-43 proteinopathy, associatedWithDisease, inclusion body myopathy with Paget disease and frontotemporal dementia]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: inclusion body myopathy with Paget disease and frontotemporal dementia
Context triple: [TDP-43 proteinopathy, associatedWithDisease, inclusion body myopathy with Paget disease and frontotemporal dementia]
  • A. TDP-43 proteinopathy
    TDP-43 proteinopathy is a neurodegenerative condition characterized by abnormal aggregation and mislocalization of the TDP-43 protein, commonly implicated in disorders such as amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • B. SOD1
    SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
  • C. Cln3
    Cln3 is a G1 cyclin in budding yeast that helps trigger the Start transition of the cell cycle by activating the Cdc28 cyclin-dependent kinase.
  • D. C9orf72
    C9orf72 is a human gene whose hexanucleotide repeat expansions are the most common known genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • E. progressive supranuclear palsy
    Progressive supranuclear palsy is a rare neurodegenerative movement disorder characterized by early postural instability, vertical gaze palsy, and cognitive and behavioral changes due to widespread tau pathology in the brain.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: inclusion body myopathy with Paget disease and frontotemporal dementia
Target entity description: Inclusion body myopathy with Paget disease and frontotemporal dementia is a rare, inherited multisystem degenerative disorder characterized by progressive muscle weakness, bone abnormalities, and early-onset cognitive and behavioral decline.
  • A. TDP-43 proteinopathy
    TDP-43 proteinopathy is a neurodegenerative condition characterized by abnormal aggregation and mislocalization of the TDP-43 protein, commonly implicated in disorders such as amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • B. SOD1
    SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
  • C. Cln3
    Cln3 is a G1 cyclin in budding yeast that helps trigger the Start transition of the cell cycle by activating the Cdc28 cyclin-dependent kinase.
  • D. C9orf72
    C9orf72 is a human gene whose hexanucleotide repeat expansions are the most common known genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • E. Pompe disease
    Pompe disease is a rare inherited metabolic disorder caused by deficiency of the enzyme acid alpha-glucosidase, leading to progressive muscle weakness and cardiomyopathy due to glycogen buildup in cells.
  • F. None of above. chosen

Provenance (2 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e2454d71b48190a1f80af9f82b6fcf completed April 17, 2026, 2:35 p.m.
NER Named-entity recognition batch_69f1789c6ae481908975b7d27e7624ac completed April 29, 2026, 3:18 a.m.
Created at: April 17, 2026, 3:13 p.m.