Triple

T22693207
Position Surface form Disambiguated ID Type / Status
Subject TDP-43 proteinopathy E561103 entity
Predicate abbreviationOfAssociatedProtein P144194 FINISHED
Object TDP-43 NE NERFINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: TDP-43 | Statement: [TDP-43 proteinopathy, abbreviationOfAssociatedProtein, TDP-43]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: TDP-43
Context triple: [TDP-43 proteinopathy, abbreviationOfAssociatedProtein, TDP-43]
  • A. C9orf72
    C9orf72 is a human gene whose hexanucleotide repeat expansions are the most common known genetic cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • B. TDP-43 proteinopathy
    TDP-43 proteinopathy is a neurodegenerative condition characterized by abnormal aggregation and mislocalization of the TDP-43 protein, commonly implicated in disorders such as amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • C. SOD1
    SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
  • D. TARDBP chosen
    TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
  • E. survival motor neuron protein
    Survival motor neuron protein is an essential cellular protein required for the maintenance and function of motor neurons, whose deficiency leads to spinal muscular atrophy.
  • F. None of above.
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: abbreviationOfAssociatedProtein
Context triple: [TDP-43 proteinopathy, abbreviationOfAssociatedProtein, TDP-43]
  • A. uniprotId
    Indicates that an entity is associated with a specific UniProt database identifier for a protein.
  • B. proteinProduct
    Indicates that one entity is the protein that is produced or encoded by another entity (such as a gene or transcript).
  • C. alternativeAbbreviation chosen
    Indicates that one term serves as an alternative shortened form or acronym for another term.
  • D. abbreviationOfFinalProduct
    Indicates that one term is an abbreviation or shortened form of the name of the final product.
  • E. relatedAbbreviationSystem
    Indicates that one entity is associated with, or belongs to, a particular system of abbreviations used to represent it.
  • F. None of above.

Provenance (3 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e2454d71b48190a1f80af9f82b6fcf completed April 17, 2026, 2:35 p.m.
NER Named-entity recognition batch_69f1789c6ae481908975b7d27e7624ac completed April 29, 2026, 3:18 a.m.
PD Predicate disambiguation batch_69ee62b2259c819091ed1387a748b9f3 completed April 26, 2026, 7:08 p.m.
Created at: April 17, 2026, 3:13 p.m.