Triple

T22693206
Position Surface form Disambiguated ID Type / Status
Subject TDP-43 proteinopathy E561103 entity
Predicate hasAssociatedProtein P112356 FINISHED
Object TAR DNA-binding protein 43 NE NERFINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: TAR DNA-binding protein 43 | Statement: [TDP-43 proteinopathy, hasAssociatedProtein, TAR DNA-binding protein 43]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: TAR DNA-binding protein 43
Context triple: [TDP-43 proteinopathy, hasAssociatedProtein, TAR DNA-binding protein 43]
  • A. TARDBP chosen
    TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
  • B. alpha-synuclein
    Alpha-synuclein is a neuronal protein whose abnormal aggregation is a hallmark of Parkinson’s disease and related synucleinopathies.
  • C. Cln3
    Cln3 is a G1 cyclin in budding yeast that helps trigger the Start transition of the cell cycle by activating the Cdc28 cyclin-dependent kinase.
  • D. TDP-43 proteinopathy
    TDP-43 proteinopathy is a neurodegenerative condition characterized by abnormal aggregation and mislocalization of the TDP-43 protein, commonly implicated in disorders such as amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
  • E. SOD1
    SOD1 is a gene encoding the antioxidant enzyme superoxide dismutase 1, whose mutations are a major known cause of familial amyotrophic lateral sclerosis (ALS).
  • F. None of above.
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: hasAssociatedProtein
Context triple: [TDP-43 proteinopathy, hasAssociatedProtein, TAR DNA-binding protein 43]
  • A. hasProteinBinding
    Indicates that one entity is capable of physically binding to or interacting specifically with a protein.
  • B. hasProteinFeature
    Indicates that a protein possesses a specific structural or functional feature, such as a domain, motif, or modification site.
  • C. hasProtein chosen
    Indicates that one entity contains, includes, or is associated with a specific protein.
  • D. uniprotId
    Indicates that an entity is associated with a specific UniProt database identifier for a protein.
  • E. proteinProduct
    Indicates that one entity is the protein that is produced or encoded by another entity (such as a gene or transcript).
  • F. None of above.

Provenance (3 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e2454d71b48190a1f80af9f82b6fcf completed April 17, 2026, 2:35 p.m.
NER Named-entity recognition batch_69f1789c6ae481908975b7d27e7624ac completed April 29, 2026, 3:18 a.m.
PD Predicate disambiguation batch_69ee62b2259c819091ed1387a748b9f3 completed April 26, 2026, 7:08 p.m.
Created at: April 17, 2026, 3:13 p.m.