Triple
T22492454
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Amphotericin B |
E556051
|
entity |
| Predicate | hasSpectrumIncludes |
P67397
|
FINISHED |
| Object | Coccidioides species |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Coccidioides species | Statement: [Amphotericin B, hasSpectrumIncludes, Coccidioides species]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Coccidioides species Context triple: [Amphotericin B, hasSpectrumIncludes, Coccidioides species]
-
A.
Histoplasma capsulatum
Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
-
B.
Cryptococcus neoformans
Cryptococcus neoformans is an encapsulated yeast-like fungal pathogen that primarily causes life-threatening meningitis and systemic infections, especially in immunocompromised individuals such as those with HIV/AIDS.
-
C.
Nocardia
Nocardia is a genus of filamentous, partially acid-fast bacteria known for causing opportunistic infections, particularly in the lungs, brain, and skin of immunocompromised individuals.
-
D.
Sporothrix
Sporothrix is a genus of dimorphic fungi best known for causing sporotrichosis, a subcutaneous infection often acquired from soil, plants, or animals.
-
E.
Pseudallescheria
Pseudallescheria is a genus of filamentous fungi known for containing opportunistic human pathogens that can cause serious infections, particularly in immunocompromised individuals.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Coccidioides species Target entity description: Coccidioides species are dimorphic fungi that cause coccidioidomycosis (Valley fever), a respiratory infection endemic to arid regions of the Americas.
-
A.
Histoplasma capsulatum
Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
-
B.
Cryptococcus neoformans
Cryptococcus neoformans is an encapsulated yeast-like fungal pathogen that primarily causes life-threatening meningitis and systemic infections, especially in immunocompromised individuals such as those with HIV/AIDS.
-
C.
Nocardia
Nocardia is a genus of filamentous, partially acid-fast bacteria known for causing opportunistic infections, particularly in the lungs, brain, and skin of immunocompromised individuals.
-
D.
Sporothrix
Sporothrix is a genus of dimorphic fungi best known for causing sporotrichosis, a subcutaneous infection often acquired from soil, plants, or animals.
-
E.
Pseudallescheria
Pseudallescheria is a genus of filamentous fungi known for containing opportunistic human pathogens that can cause serious infections, particularly in immunocompromised individuals.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e11e5445bc8190b6a9481926db3355 |
completed | April 16, 2026, 5:37 p.m. |
| NER | Named-entity recognition | batch_69f15cb01b3481908a9143503b75167f |
completed | April 29, 2026, 1:19 a.m. |
Created at: April 16, 2026, 8:49 p.m.