Triple
T2108033
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Thaumarchaeota |
E42438
|
entity |
| Predicate | hasRepresentativeGenus |
P5980
|
FINISHED |
| Object |
Nitrosopumilus
Nitrosopumilus is a genus of marine ammonia-oxidizing archaea that plays a key role in the global nitrogen cycle, particularly in oceanic environments.
|
E236119
|
NE FINISHED |
How this triple was built (5 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Nitrosopumilus | Statement: [Thaumarchaeota, hasRepresentativeGenus, Nitrosopumilus]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Nitrosopumilus Context triple: [Thaumarchaeota, hasRepresentativeGenus, Nitrosopumilus]
-
A.
Thaumarchaeota
Thaumarchaeota are a phylum of Archaea known primarily for their role in ammonia oxidation and global nitrogen cycling in diverse environments.
-
B.
Korarchaeota
Korarchaeota are a deeply branching, poorly understood lineage of Archaea typically found in high-temperature environments and known mainly from environmental DNA rather than cultivated representatives.
-
C.
Nanoarchaeota
Nanoarchaeota is a phylum of ultra-small, symbiotic archaea known for their reduced genomes and association with other archaeal hosts in extreme environments.
-
D.
Pyrobaculum aerophilum
Pyrobaculum aerophilum is a hyperthermophilic archaeon that thrives in extremely high-temperature, often sulfur-rich environments and serves as a model organism for studying the biology of Crenarchaeota.
-
E.
Campylobacterota
Campylobacterota is a phylum of Gram-negative, often spiral-shaped bacteria that includes several important gastrointestinal pathogens affecting humans and animals.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Nitrosopumilus Triple: [Thaumarchaeota, hasRepresentativeGenus, Nitrosopumilus]
Generated description
Nitrosopumilus is a genus of marine ammonia-oxidizing archaea that plays a key role in the global nitrogen cycle, particularly in oceanic environments.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Nitrosopumilus Target entity description: Nitrosopumilus is a genus of marine ammonia-oxidizing archaea that plays a key role in the global nitrogen cycle, particularly in oceanic environments.
-
A.
Thaumarchaeota
Thaumarchaeota are a phylum of Archaea known primarily for their role in ammonia oxidation and global nitrogen cycling in diverse environments.
-
B.
Korarchaeota
Korarchaeota are a deeply branching, poorly understood lineage of Archaea typically found in high-temperature environments and known mainly from environmental DNA rather than cultivated representatives.
-
C.
Nanoarchaeota
Nanoarchaeota is a phylum of ultra-small, symbiotic archaea known for their reduced genomes and association with other archaeal hosts in extreme environments.
-
D.
Pyrobaculum aerophilum
Pyrobaculum aerophilum is a hyperthermophilic archaeon that thrives in extremely high-temperature, often sulfur-rich environments and serves as a model organism for studying the biology of Crenarchaeota.
-
E.
Campylobacterota
Campylobacterota is a phylum of Gram-negative, often spiral-shaped bacteria that includes several important gastrointestinal pathogens affecting humans and animals.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: hasRepresentativeGenus Context triple: [Thaumarchaeota, hasRepresentativeGenus, Nitrosopumilus]
-
A.
hasGenus
Indicates that one entity belongs to, or is classified under, the biological genus represented by the other entity.
-
B.
genusIncludes
Indicates that a particular genus contains or encompasses the specified subordinate taxonomic entities (such as species or subspecies).
-
C.
hasFlagshipSpecies
Indicates that one entity (typically a site, region, or conservation program) is associated with or represented by a particular flagship species used to promote awareness or protection.
-
D.
hasTypeGenus
chosen
Indicates that one entity is the type genus that formally defines or represents the taxonomic group of the other entity.
-
E.
notableGenus
Indicates that one entity is a genus that is especially prominent, well-known, or significant in relation to the other entity.
- F. None of above.
Provenance (6 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69a8871040f08190aac2e2d0ab6b47ad |
completed | March 4, 2026, 7:25 p.m. |
| NER | Named-entity recognition | batch_69abbae03f308190841f5a419bb821f6 |
completed | March 7, 2026, 5:42 a.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ae51926e4481909dd148b5cab3b6ec |
completed | March 9, 2026, 4:50 a.m. |
| NEDg | Description generation | batch_69ae5254e95881909ce695be86430c9d |
completed | March 9, 2026, 4:53 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69ae52d46ef48190bbd6b7cc9fcda2a4 |
completed | March 9, 2026, 4:55 a.m. |
| PD | Predicate disambiguation | batch_69abb7b7b6288190afa11b4d93bd5666 |
completed | March 7, 2026, 5:29 a.m. |
Created at: March 4, 2026, 7:43 p.m.