Triple

T19992668
Position Surface form Disambiguated ID Type / Status
Subject APOE ε3 allele E494101 entity
Predicate proteinIsoformBindsReceptor P37224 FINISHED
Object LDL receptor NE NERFINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: LDL receptor | Statement: [APOE ε3 allele, proteinIsoformBindsReceptor, LDL receptor]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: LDL receptor
Context triple: [APOE ε3 allele, proteinIsoformBindsReceptor, LDL receptor]
  • A. LDL receptor chosen
    The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
  • B. NPC1L1 transporter
    The NPC1L1 transporter is an intestinal membrane protein that mediates cholesterol absorption from the gut and is inhibited by the lipid-lowering drug ezetimibe.
  • C. Frizzled receptor
    Frizzled receptors are a family of G protein–coupled receptor-like proteins that serve as primary cell-surface receptors for Wnt signaling, regulating key processes in development and cell fate determination.
  • D. LRP1
    LRP1 is a multifunctional endocytic and signaling receptor involved in lipid metabolism, clearance of extracellular molecules, and modulation of neuronal and vascular processes.
  • E. Ldl
    Ldl is the official station code for Leiden Lammenschans railway station in the Netherlands.
  • F. None of above.
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
PD Predicate disambiguation gpt-5-mini-2025-08-07
Target predicate: proteinIsoformBindsReceptor
Context triple: [APOE ε3 allele, proteinIsoformBindsReceptor, LDL receptor]
  • A. hasProteinBinding chosen
    Indicates that one entity is capable of physically binding to or interacting specifically with a protein.
  • B. receptorTypeAtEffector
    Indicates that a specific type of receptor is present at, or associated with, a particular effector site or effector cell.
  • C. isoformNumber
    Indicates the specific variant index or identifier assigned to one isoform among multiple alternative forms of the same gene or protein.
  • D. receptorSystem
    Indicates that one entity functions as a receptor system through which another entity receives, processes, or responds to signals or stimuli.
  • E. bindsNucleotide
    Indicates that one entity physically attaches to or associates with a nucleotide molecule.
  • F. None of above.

Provenance (3 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69da626a67648190af9653832a3aeced completed April 11, 2026, 3:02 p.m.
NER Named-entity recognition batch_69e65fe10ffc81908c94168b0a8ea9c9 completed April 20, 2026, 5:18 p.m.
PD Predicate disambiguation batch_69e537fd311881908448f2aea8b4812e completed April 19, 2026, 8:15 p.m.
Created at: April 11, 2026, 3:31 p.m.