Triple
T19992667
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | APOE ε3 allele |
E494101
|
entity |
| Predicate | producesProteinIsoform |
P135043
|
FINISHED |
| Object | apolipoprotein E3 |
—
|
NE NERFINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: apolipoprotein E3 | Statement: [APOE ε3 allele, producesProteinIsoform, apolipoprotein E3]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: apolipoprotein E3 Context triple: [APOE ε3 allele, producesProteinIsoform, apolipoprotein E3]
-
A.
APOE ε3 allele
The APOE ε3 allele is the most common and generally considered the “neutral” variant of the apolipoprotein E gene, associated with average risk for Alzheimer’s disease and typical lipid metabolism compared to other APOE alleles.
-
B.
APOE ε2
APOE ε2 is a common apolipoprotein E gene variant associated with a reduced risk of late-onset Alzheimer’s disease but an increased risk of type III hyperlipoproteinemia.
-
C.
APOE gene
The APOE gene encodes apolipoprotein E, a key protein in lipid metabolism whose variants, especially ε4, strongly influence risk for Alzheimer’s disease and cardiovascular disorders.
-
D.
APOE ε4 allele
The APOE ε4 allele is a genetic variant of the apolipoprotein E gene that significantly increases an individual's susceptibility to late-onset Alzheimer's disease.
-
E.
LDL receptor
The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: apolipoprotein E3 Target entity description: Apolipoprotein E3 is the most common isoform of apolipoprotein E, a lipid-transport protein that plays a central role in cholesterol metabolism and is considered the “neutral” variant with respect to Alzheimer’s disease risk.
-
A.
APOE ε3 allele
chosen
The APOE ε3 allele is the most common and generally considered the “neutral” variant of the apolipoprotein E gene, associated with average risk for Alzheimer’s disease and typical lipid metabolism compared to other APOE alleles.
-
B.
APOE ε2
APOE ε2 is a common apolipoprotein E gene variant associated with a reduced risk of late-onset Alzheimer’s disease but an increased risk of type III hyperlipoproteinemia.
-
C.
APOE gene
The APOE gene encodes apolipoprotein E, a key protein in lipid metabolism whose variants, especially ε4, strongly influence risk for Alzheimer’s disease and cardiovascular disorders.
-
D.
APOE ε4 allele
The APOE ε4 allele is a genetic variant of the apolipoprotein E gene that significantly increases an individual's susceptibility to late-onset Alzheimer's disease.
-
E.
LDL receptor
The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
- F. None of above.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: producesProteinIsoform Context triple: [APOE ε3 allele, producesProteinIsoform, apolipoprotein E3]
-
A.
isoformNumber
Indicates the specific variant index or identifier assigned to one isoform among multiple alternative forms of the same gene or protein.
-
B.
minorIsoform
Indicates that one biological isoform is a less prevalent or secondary variant relative to another isoform.
-
C.
proteinProduct
chosen
Indicates that one entity is the protein that is produced or encoded by another entity (such as a gene or transcript).
-
D.
isProtein
Indicates that the subject entity is classified as a protein.
-
E.
producesFor
Indicates that one entity creates, manufactures, or generates something specifically intended for another entity’s use, benefit, or distribution.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69da626a67648190af9653832a3aeced |
completed | April 11, 2026, 3:02 p.m. |
| NER | Named-entity recognition | batch_69e65fe10ffc81908c94168b0a8ea9c9 |
completed | April 20, 2026, 5:18 p.m. |
| PD | Predicate disambiguation | batch_69e537fd311881908448f2aea8b4812e |
completed | April 19, 2026, 8:15 p.m. |
Created at: April 11, 2026, 3:31 p.m.