Triple
T19992652
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | APOE ε3 allele |
E494101
|
entity |
| Predicate | hasCommonCodingSNP |
P78759
|
FINISHED |
| Object | rs429358 C allele |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: rs429358 C allele | Statement: [APOE ε3 allele, hasCommonCodingSNP, rs429358 C allele]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: hasCommonCodingSNP Context triple: [APOE ε3 allele, hasCommonCodingSNP, rs429358 C allele]
-
A.
hasAllele
chosen
Indicates that a biological entity possesses or carries a specific allele variant of a gene.
-
B.
hasGeneticLocus
Indicates that a genetic feature or trait is located at, or associated with, a specific position (locus) on a genome or chromosome.
-
C.
hasGene
Indicates that an entity possesses or contains a specific gene as part of its genetic makeup.
-
D.
hasPharmacogenomicAssociation
Indicates that there is a documented relationship between a genetic variant and a drug’s response, efficacy, or toxicity.
-
E.
mainSNPLeader
Indicates that the person serves as the primary or top leader of the SNP (Scottish National Party).
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69da626a67648190af9653832a3aeced |
completed | April 11, 2026, 3:02 p.m. |
| NER | Named-entity recognition | batch_69e65fe10ffc81908c94168b0a8ea9c9 |
completed | April 20, 2026, 5:18 p.m. |
| PD | Predicate disambiguation | batch_69e537fd311881908448f2aea8b4812e |
completed | April 19, 2026, 8:15 p.m. |
Created at: April 11, 2026, 3:31 p.m.