Triple
T19245364
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | INS gene |
E481234
|
entity |
| Predicate | memberOfPathway |
P134658
|
FINISHED |
| Object | MAPK signaling pathway |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: MAPK signaling pathway | Statement: [INS gene, memberOfPathway, MAPK signaling pathway]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: MAPK signaling pathway Context triple: [INS gene, memberOfPathway, MAPK signaling pathway]
-
A.
MAPK signaling pathway
chosen
The MAPK signaling pathway is a key intracellular cascade that transmits growth and survival signals from cell surface receptors to the nucleus, regulating processes such as proliferation, differentiation, and apoptosis.
-
B.
PI3K-AKT signaling pathway
The PI3K-AKT signaling pathway is a key intracellular cascade that regulates cell growth, survival, metabolism, and proliferation, and is frequently dysregulated in cancer.
-
C.
Notch signaling pathway
The Notch signaling pathway is a highly conserved cell–cell communication system that regulates cell fate decisions, differentiation, and tissue development in multicellular organisms.
-
D.
JAK-STAT signaling pathway
The JAK-STAT signaling pathway is a key intracellular cascade that transmits signals from cell-surface receptors to the nucleus to regulate gene expression involved in cell growth, differentiation, immune function, and survival.
-
E.
Reactome pathways
Reactome pathways are curated, peer-reviewed biological pathways that map molecular interactions and processes in human biology and other species.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8e8cd9d1081908a181d02b88b59b8 |
completed | April 10, 2026, 12:10 p.m. |
| NER | Named-entity recognition | batch_69e5fb2c34e88190a338e5a7ba906425 |
completed | April 20, 2026, 10:08 a.m. |
Created at: April 10, 2026, 1:27 p.m.