Triple
T19245362
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | INS gene |
E481234
|
entity |
| Predicate | memberOfPathway |
P134658
|
FINISHED |
| Object | insulin signaling pathway |
—
|
NE NERFINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: insulin signaling pathway | Statement: [INS gene, memberOfPathway, insulin signaling pathway]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: insulin signaling pathway Context triple: [INS gene, memberOfPathway, insulin signaling pathway]
-
A.
PI3K-AKT signaling pathway
The PI3K-AKT signaling pathway is a key intracellular cascade that regulates cell growth, survival, metabolism, and proliferation, and is frequently dysregulated in cancer.
-
B.
MAPK signaling pathway
The MAPK signaling pathway is a key intracellular cascade that transmits growth and survival signals from cell surface receptors to the nucleus, regulating processes such as proliferation, differentiation, and apoptosis.
-
C.
insulin
Insulin is a peptide hormone produced by the pancreas that regulates blood glucose levels and is essential in the treatment of diabetes.
-
D.
JAK-STAT signaling pathway
The JAK-STAT signaling pathway is a key intracellular cascade that transmits signals from cell-surface receptors to the nucleus to regulate gene expression involved in cell growth, differentiation, immune function, and survival.
-
E.
Preiss–Handler pathway
The Preiss–Handler pathway is a metabolic route in which cells convert nicotinic acid (niacin) into NAD+, a vital coenzyme involved in redox reactions and energy metabolism.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: insulin signaling pathway Target entity description: The insulin signaling pathway is a cellular communication network through which insulin regulates glucose uptake, metabolism, and growth-related processes in target tissues.
-
A.
PI3K-AKT signaling pathway
The PI3K-AKT signaling pathway is a key intracellular cascade that regulates cell growth, survival, metabolism, and proliferation, and is frequently dysregulated in cancer.
-
B.
MAPK signaling pathway
The MAPK signaling pathway is a key intracellular cascade that transmits growth and survival signals from cell surface receptors to the nucleus, regulating processes such as proliferation, differentiation, and apoptosis.
-
C.
insulin
Insulin is a peptide hormone produced by the pancreas that regulates blood glucose levels and is essential in the treatment of diabetes.
-
D.
JAK-STAT signaling pathway
The JAK-STAT signaling pathway is a key intracellular cascade that transmits signals from cell-surface receptors to the nucleus to regulate gene expression involved in cell growth, differentiation, immune function, and survival.
-
E.
Preiss–Handler pathway
The Preiss–Handler pathway is a metabolic route in which cells convert nicotinic acid (niacin) into NAD+, a vital coenzyme involved in redox reactions and energy metabolism.
- F. None of above. chosen
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: memberOfPathway Context triple: [INS gene, memberOfPathway, insulin signaling pathway]
-
A.
hasPathway
Indicates that there exists a route, channel, or sequence of steps through which one entity leads, connects, or gives access to another.
-
B.
regulatoryPathway
chosen
Indicates that one entity is part of, or participates in, a biological or organizational regulatory pathway that controls the activity, expression, or behavior of another.
-
C.
supportsPathway
Indicates that one entity contributes to, enables, or maintains the functioning or progression of a specified pathway.
-
D.
transferPathwayTo
Indicates the act of moving or reassigning a pathway (such as a process, route, or channel) from one entity to another.
-
E.
nationalPathwayRole
Indicates the specific role or function an entity holds within a national-level pathway, framework, or process.
- F. None of above.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8e8cd9d1081908a181d02b88b59b8 |
completed | April 10, 2026, 12:10 p.m. |
| NER | Named-entity recognition | batch_69e5fb2c34e88190a338e5a7ba906425 |
completed | April 20, 2026, 10:08 a.m. |
| PD | Predicate disambiguation | batch_69e4dd002d00819088b625056edfb74e |
completed | April 19, 2026, 1:47 p.m. |
Created at: April 10, 2026, 1:27 p.m.