Triple
T19245358
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | INS gene |
E481234
|
entity |
| Predicate | regulatedBy |
P86
|
FINISHED |
| Object | NEUROD1 transcription factor |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: NEUROD1 transcription factor | Statement: [INS gene, regulatedBy, NEUROD1 transcription factor]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: NEUROD1 transcription factor Context triple: [INS gene, regulatedBy, NEUROD1 transcription factor]
-
A.
Sox2
Sox2 is a key transcription factor that maintains stem cell pluripotency and self-renewal and is widely used in cellular reprogramming.
-
B.
Notch intracellular domain
The Notch intracellular domain is the cleaved, cytoplasmic fragment of the Notch receptor that translocates to the nucleus to regulate gene transcription in the Notch signaling pathway.
-
C.
Wnt1
Wnt1 is a highly conserved signaling protein in the Wnt family that plays a crucial role in embryonic development, cell fate determination, and oncogenesis in vertebrates.
-
D.
c-Myc
c-Myc is a proto-oncogene transcription factor that regulates cell growth, proliferation, and metabolism and is frequently dysregulated in cancer.
-
E.
TARDBP
TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: NEUROD1 transcription factor Target entity description: NEUROD1 transcription factor is a basic helix-loop-helix (bHLH) transcription factor crucial for neuronal differentiation and pancreatic beta-cell development, where it helps control insulin gene expression.
-
A.
Sox2
Sox2 is a key transcription factor that maintains stem cell pluripotency and self-renewal and is widely used in cellular reprogramming.
-
B.
Notch intracellular domain
The Notch intracellular domain is the cleaved, cytoplasmic fragment of the Notch receptor that translocates to the nucleus to regulate gene transcription in the Notch signaling pathway.
-
C.
Wnt1
Wnt1 is a highly conserved signaling protein in the Wnt family that plays a crucial role in embryonic development, cell fate determination, and oncogenesis in vertebrates.
-
D.
c-Myc
c-Myc is a proto-oncogene transcription factor that regulates cell growth, proliferation, and metabolism and is frequently dysregulated in cancer.
-
E.
TARDBP
TARDBP is a gene encoding the TDP-43 protein, a DNA/RNA-binding protein whose abnormal aggregation is a key pathological feature in amyotrophic lateral sclerosis and related neurodegenerative diseases.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8e8cd9d1081908a181d02b88b59b8 |
completed | April 10, 2026, 12:10 p.m. |
| NER | Named-entity recognition | batch_69e5fb2c34e88190a338e5a7ba906425 |
completed | April 20, 2026, 10:08 a.m. |
Created at: April 10, 2026, 1:27 p.m.