Triple
T19245356
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | INS gene |
E481234
|
entity |
| Predicate | regulatedBy |
P86
|
FINISHED |
| Object | PDX1 transcription factor |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: PDX1 transcription factor | Statement: [INS gene, regulatedBy, PDX1 transcription factor]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: PDX1 transcription factor Context triple: [INS gene, regulatedBy, PDX1 transcription factor]
-
A.
Sox2
Sox2 is a key transcription factor that maintains stem cell pluripotency and self-renewal and is widely used in cellular reprogramming.
-
B.
Wnt1
Wnt1 is a highly conserved signaling protein in the Wnt family that plays a crucial role in embryonic development, cell fate determination, and oncogenesis in vertebrates.
-
C.
Frizzled receptor
Frizzled receptors are a family of G protein–coupled receptor-like proteins that serve as primary cell-surface receptors for Wnt signaling, regulating key processes in development and cell fate determination.
-
D.
Yamanaka factors
Yamanaka factors are a set of transcription factors that can reprogram adult somatic cells into induced pluripotent stem cells, revolutionizing regenerative medicine and stem cell research.
-
E.
Notch intracellular domain
The Notch intracellular domain is the cleaved, cytoplasmic fragment of the Notch receptor that translocates to the nucleus to regulate gene transcription in the Notch signaling pathway.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: PDX1 transcription factor Target entity description: PDX1 transcription factor is a key homeodomain protein that controls pancreatic development and beta-cell function, including the activation of insulin gene expression.
-
A.
Sox2
Sox2 is a key transcription factor that maintains stem cell pluripotency and self-renewal and is widely used in cellular reprogramming.
-
B.
Wnt1
Wnt1 is a highly conserved signaling protein in the Wnt family that plays a crucial role in embryonic development, cell fate determination, and oncogenesis in vertebrates.
-
C.
Frizzled receptor
Frizzled receptors are a family of G protein–coupled receptor-like proteins that serve as primary cell-surface receptors for Wnt signaling, regulating key processes in development and cell fate determination.
-
D.
Yamanaka factors
Yamanaka factors are a set of transcription factors that can reprogram adult somatic cells into induced pluripotent stem cells, revolutionizing regenerative medicine and stem cell research.
-
E.
Notch intracellular domain
The Notch intracellular domain is the cleaved, cytoplasmic fragment of the Notch receptor that translocates to the nucleus to regulate gene transcription in the Notch signaling pathway.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8e8cd9d1081908a181d02b88b59b8 |
completed | April 10, 2026, 12:10 p.m. |
| NER | Named-entity recognition | batch_69e5fb2c34e88190a338e5a7ba906425 |
completed | April 20, 2026, 10:08 a.m. |
Created at: April 10, 2026, 1:27 p.m.