Triple
T19245355
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | INS gene |
E481234
|
entity |
| Predicate | regulatedBy |
P86
|
FINISHED |
| Object | FOXA2 transcription factor |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: FOXA2 transcription factor | Statement: [INS gene, regulatedBy, FOXA2 transcription factor]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: FOXA2 transcription factor Context triple: [INS gene, regulatedBy, FOXA2 transcription factor]
-
A.
Sox2
Sox2 is a key transcription factor that maintains stem cell pluripotency and self-renewal and is widely used in cellular reprogramming.
-
B.
Oct3/4
Oct3/4 (also known as POU5F1) is a key transcription factor that maintains pluripotency and self-renewal in embryonic stem cells and is widely used in cellular reprogramming.
-
C.
Wnt1
Wnt1 is a highly conserved signaling protein in the Wnt family that plays a crucial role in embryonic development, cell fate determination, and oncogenesis in vertebrates.
-
D.
CTCF
CTCF is a state prison facility in Colorado that houses incarcerated individuals under the jurisdiction of the Colorado Department of Corrections.
-
E.
c-Myc
c-Myc is a proto-oncogene transcription factor that regulates cell growth, proliferation, and metabolism and is frequently dysregulated in cancer.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: FOXA2 transcription factor Target entity description: FOXA2 transcription factor is a forkhead box transcription factor that plays a key role in regulating genes involved in pancreatic beta-cell function, glucose metabolism, and endoderm development.
-
A.
Sox2
Sox2 is a key transcription factor that maintains stem cell pluripotency and self-renewal and is widely used in cellular reprogramming.
-
B.
Oct3/4
Oct3/4 (also known as POU5F1) is a key transcription factor that maintains pluripotency and self-renewal in embryonic stem cells and is widely used in cellular reprogramming.
-
C.
Wnt1
Wnt1 is a highly conserved signaling protein in the Wnt family that plays a crucial role in embryonic development, cell fate determination, and oncogenesis in vertebrates.
-
D.
CTCF
CTCF is a state prison facility in Colorado that houses incarcerated individuals under the jurisdiction of the Colorado Department of Corrections.
-
E.
c-Myc
c-Myc is a proto-oncogene transcription factor that regulates cell growth, proliferation, and metabolism and is frequently dysregulated in cancer.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8e8cd9d1081908a181d02b88b59b8 |
completed | April 10, 2026, 12:10 p.m. |
| NER | Named-entity recognition | batch_69e5fb2c34e88190a338e5a7ba906425 |
completed | April 20, 2026, 10:08 a.m. |
Created at: April 10, 2026, 1:27 p.m.