Triple

T18753425
Position Surface form Disambiguated ID Type / Status
Subject Department of Human Genetics, University of Chicago E458585 entity
Predicate collaboratesWith P37 FINISHED
Object Institute for Genomics and Systems Biology, University of Chicago — NE NERFINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Institute for Genomics and Systems Biology, University of Chicago | Statement: [Department of Human Genetics, University of Chicago, collaboratesWith, Institute for Genomics and Systems Biology, University of Chicago]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: Institute for Genomics and Systems Biology, University of Chicago
Context triple: [Department of Human Genetics, University of Chicago, collaboratesWith, Institute for Genomics and Systems Biology, University of Chicago]
  • A. Institute of Systems Biology
    The Institute of Systems Biology is a research center at Universiti Kebangsaan Malaysia focused on integrative, interdisciplinary studies of biological systems using computational and experimental approaches.
  • B. Icahn Institute for Genomics and Multiscale Biology
    The Icahn Institute for Genomics and Multiscale Biology is a research center focused on applying genomics, computational biology, and systems-level approaches to understand human disease and advance precision medicine.
  • C. Institute for Integrative Genome Biology
    The Institute for Integrative Genome Biology is a research center focused on applying genomic, bioinformatic, and systems biology approaches to understand complex biological processes across diverse organisms.
  • D. Biological Sciences Division, University of Chicago
    The Biological Sciences Division at the University of Chicago is the university’s integrated academic and research unit for medicine and the life sciences, encompassing its medical school, graduate programs, and biomedical research departments.
  • E. Yale Systems Biology Institute
    The Yale Systems Biology Institute is a research center at Yale University dedicated to understanding complex biological systems through interdisciplinary approaches that integrate biology, mathematics, physics, and computational science.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: Institute for Genomics and Systems Biology, University of Chicago
Target entity description: The Institute for Genomics and Systems Biology at the University of Chicago is a research center focused on understanding complex biological systems through integrative genomics, computational biology, and interdisciplinary collaboration.
  • A. Institute of Systems Biology
    The Institute of Systems Biology is a research center at Universiti Kebangsaan Malaysia focused on integrative, interdisciplinary studies of biological systems using computational and experimental approaches.
  • B. Icahn Institute for Genomics and Multiscale Biology
    The Icahn Institute for Genomics and Multiscale Biology is a research center focused on applying genomics, computational biology, and systems-level approaches to understand human disease and advance precision medicine.
  • C. Institute for Integrative Genome Biology
    The Institute for Integrative Genome Biology is a research center focused on applying genomic, bioinformatic, and systems biology approaches to understand complex biological processes across diverse organisms.
  • D. Biological Sciences Division, University of Chicago
    The Biological Sciences Division at the University of Chicago is the university’s integrated academic and research unit for medicine and the life sciences, encompassing its medical school, graduate programs, and biomedical research departments.
  • E. Yale Systems Biology Institute
    The Yale Systems Biology Institute is a research center at Yale University dedicated to understanding complex biological systems through interdisciplinary approaches that integrate biology, mathematics, physics, and computational science.
  • F. None of above. chosen

Provenance (2 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d8d394dc308190b6725073f5db324c completed April 10, 2026, 10:40 a.m.
NER Named-entity recognition batch_69e579ef4ee48190a9892ac9787ffe37 completed April 20, 2026, 12:57 a.m.
Created at: April 10, 2026, 11:51 a.m.