Triple

T1793144

Position	Surface form	Disambiguated ID	Type / Status
Subject	AlphaFold	`E39542`	entity
Predicate	relatedTo	`P37`	FINISHED
Object	Protein Data Bank The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.	`E200553`	NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini

Instruction

Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).

Input

Phrase: Protein Data Bank | Statement: [AlphaFold, relatedTo, Protein Data Bank]

NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07

Target entity: Protein Data Bank
Context triple: [AlphaFold, relatedTo, Protein Data Bank]

A. Cambridge Crystallographic Data Centre
The Cambridge Crystallographic Data Centre is a leading research organization that curates and distributes the world’s primary database of small-molecule organic and metal-organic crystal structures for the scientific community.
B. National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
C. Crystallographic Information Framework
The Crystallographic Information Framework is a standardized data format and ontology used worldwide for representing, exchanging, and archiving crystallographic and related structural science data.
D. IUCrData
IUCrData is an open-access crystallography data journal published by the International Union of Crystallography, focusing on brief reports of crystal structure determinations and related datasets.
E. Global Biodiversity Information Facility
The Global Biodiversity Information Facility (GBIF) is an international open-data infrastructure that provides free access to biodiversity occurrence records from institutions and citizen-science projects worldwide.
F. None of above. chosen
G. Unsure - the case is ambiguous/there is not enough information to decide.

NEDg Description generation gpt-5.1

Instruction

Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"

Input

Entity: Protein Data Bank
Triple: [AlphaFold, relatedTo, Protein Data Bank]

Generated description

The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.

NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07

Target entity: Protein Data Bank
Target entity description: The Protein Data Bank is a global repository that archives and provides open access to 3D structural data of biological macromolecules such as proteins and nucleic acids.

A. Cambridge Crystallographic Data Centre
The Cambridge Crystallographic Data Centre is a leading research organization that curates and distributes the world’s primary database of small-molecule organic and metal-organic crystal structures for the scientific community.
B. National Center for Biotechnology Information
The National Center for Biotechnology Information (NCBI) is a U.S. government bioinformatics institution that develops and hosts major biological databases and tools for biomedical research.
C. Crystallographic Information Framework
The Crystallographic Information Framework is a standardized data format and ontology used worldwide for representing, exchanging, and archiving crystallographic and related structural science data.
D. IUCrData
IUCrData is an open-access crystallography data journal published by the International Union of Crystallography, focusing on brief reports of crystal structure determinations and related datasets.
E. Global Biodiversity Information Facility
The Global Biodiversity Information Facility (GBIF) is an international open-data infrastructure that provides free access to biodiversity occurrence records from institutions and citizen-science projects worldwide.
F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step	Stage	Batch ID	Status	When
creating	Elicitation	`batch_69a88631854081909723959921e45c2b`	completed	March 4, 2026, 7:21 p.m.
NER	Named-entity recognition	`batch_69aa653b02448190bc475bc22187f5b0`	completed	March 6, 2026, 5:25 a.m.
NED1	Entity disambiguation (via context triple)	`batch_69adb5d26afc81909675064289d3a5b8`	completed	March 8, 2026, 5:45 p.m.
NEDg	Description generation	`batch_69adb69b142c81909dd8bd40e8e440ad`	completed	March 8, 2026, 5:49 p.m.
NED2	Entity disambiguation (via description)	`batch_69adb8bac99081908cf126d42c609559`	completed	March 8, 2026, 5:58 p.m.

Created at: March 4, 2026, 7:32 p.m.