Triple
T17871579
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Oxlumo |
E446847
|
entity |
| Predicate | belongsToPathway |
P27773
|
FINISHED |
| Object | RNA interference pathway |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: RNA interference pathway | Statement: [Oxlumo, belongsToPathway, RNA interference pathway]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: RNA interference pathway Context triple: [Oxlumo, belongsToPathway, RNA interference pathway]
-
A.
JAK-STAT signaling pathway
The JAK-STAT signaling pathway is a key intracellular cascade that transmits signals from cell-surface receptors to the nucleus to regulate gene expression involved in cell growth, differentiation, immune function, and survival.
-
B.
Toll-like receptor signaling pathway
The Toll-like receptor signaling pathway is a key innate immune signaling cascade that detects pathogen-associated molecular patterns and activates downstream inflammatory and antiviral responses.
-
C.
CRISPR-Cas systems
CRISPR-Cas systems are adaptive immune mechanisms found in bacteria and archaea that have been repurposed as powerful, programmable tools for genome editing and gene regulation.
-
D.
RNA
RNA (Ribonucleic Acid) is a vital biological macromolecule that plays key roles in coding, decoding, regulation, and expression of genes in all living organisms.
-
E.
Preiss–Handler pathway
The Preiss–Handler pathway is a metabolic route in which cells convert nicotinic acid (niacin) into NAD+, a vital coenzyme involved in redox reactions and energy metabolism.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: RNA interference pathway Target entity description: The RNA interference pathway is a cellular mechanism in which small RNA molecules guide the sequence-specific silencing of target genes, typically by promoting the degradation or translational repression of complementary messenger RNAs.
-
A.
JAK-STAT signaling pathway
The JAK-STAT signaling pathway is a key intracellular cascade that transmits signals from cell-surface receptors to the nucleus to regulate gene expression involved in cell growth, differentiation, immune function, and survival.
-
B.
Toll-like receptor signaling pathway
The Toll-like receptor signaling pathway is a key innate immune signaling cascade that detects pathogen-associated molecular patterns and activates downstream inflammatory and antiviral responses.
-
C.
CRISPR-Cas systems
CRISPR-Cas systems are adaptive immune mechanisms found in bacteria and archaea that have been repurposed as powerful, programmable tools for genome editing and gene regulation.
-
D.
RNA
RNA (Ribonucleic Acid) is a vital biological macromolecule that plays key roles in coding, decoding, regulation, and expression of genes in all living organisms.
-
E.
Preiss–Handler pathway
The Preiss–Handler pathway is a metabolic route in which cells convert nicotinic acid (niacin) into NAD+, a vital coenzyme involved in redox reactions and energy metabolism.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8b9f4c22c819093c2680434472894 |
completed | April 10, 2026, 8:51 a.m. |
| NER | Named-entity recognition | batch_69e49aa30ff8819090c51c1d7767e952 |
completed | April 19, 2026, 9:04 a.m. |
Created at: April 10, 2026, 10:18 a.m.