Triple
T17521752
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Bioconductor |
E426691
|
entity |
| Predicate | compatibleWith |
P203
|
FINISHED |
| Object | BiocManager |
—
|
NE NERFINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: BiocManager | Statement: [Bioconductor, compatibleWith, BiocManager]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: BiocManager Context triple: [Bioconductor, compatibleWith, BiocManager]
-
A.
BiocManager R package
chosen
The BiocManager R package is a tool that streamlines the installation and management of Bioconductor packages within the R environment.
-
B.
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
C.
RStudio Package Manager
RStudio Package Manager is an enterprise-grade repository management system that lets organizations centrally curate, manage, and distribute R (and often Python) packages for reproducible, secure data science workflows.
-
D.
CRAN
CRAN is the Comprehensive R Archive Network, a primary repository for R packages, source code, and documentation used by the R programming community.
-
E.
biomaRt package
The biomaRt package is an R/Bioconductor tool that provides programmatic access to a wide range of biological databases via the BioMart data management system, enabling flexible retrieval and integration of genomic annotation data.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d889de677081909b22d2657b1f0292 |
completed | April 10, 2026, 5:25 a.m. |
| NER | Named-entity recognition | batch_69e452d2f79881909556894728e255ab |
completed | April 19, 2026, 3:58 a.m. |
Created at: April 10, 2026, 5:49 a.m.