Triple
T17521738
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Bioconductor |
E426691
|
entity |
| Predicate | hasComponent |
P35
|
FINISHED |
| Object | BiocNeighbors package |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: BiocNeighbors package | Statement: [Bioconductor, hasComponent, BiocNeighbors package]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: BiocNeighbors package Context triple: [Bioconductor, hasComponent, BiocNeighbors package]
-
A.
KNN
KNN (k-nearest neighbors) is a simple, non-parametric machine learning algorithm used for classification and regression by predicting labels based on the closest training examples in the feature space.
-
B.
Mahalanobis distance
Mahalanobis distance is a multivariate measure of the distance between a point and a distribution (or between distributions) that accounts for correlations between variables via the covariance matrix.
-
C.
von Neumann neighborhood
The von Neumann neighborhood is a grid-based notion of adjacency in cellular automata and lattice models where each cell interacts only with the four orthogonally adjacent cells (up, down, left, right).
-
D.
Bhattacharyya coefficient
The Bhattacharyya coefficient is a statistical measure of similarity between two probability distributions, often used to quantify their overlap in fields like pattern recognition and signal processing.
-
E.
DBSCAN algorithm
The DBSCAN algorithm is a density-based clustering method in data mining that groups together closely packed points while marking points in low-density regions as outliers.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: BiocNeighbors package Target entity description: The BiocNeighbors package is a Bioconductor tool that provides efficient nearest-neighbor search methods for high-dimensional biological data analysis in R.
-
A.
KNN
KNN (k-nearest neighbors) is a simple, non-parametric machine learning algorithm used for classification and regression by predicting labels based on the closest training examples in the feature space.
-
B.
Mahalanobis distance
Mahalanobis distance is a multivariate measure of the distance between a point and a distribution (or between distributions) that accounts for correlations between variables via the covariance matrix.
-
C.
von Neumann neighborhood
The von Neumann neighborhood is a grid-based notion of adjacency in cellular automata and lattice models where each cell interacts only with the four orthogonally adjacent cells (up, down, left, right).
-
D.
Bhattacharyya coefficient
The Bhattacharyya coefficient is a statistical measure of similarity between two probability distributions, often used to quantify their overlap in fields like pattern recognition and signal processing.
-
E.
DBSCAN algorithm
The DBSCAN algorithm is a density-based clustering method in data mining that groups together closely packed points while marking points in low-density regions as outliers.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d889de677081909b22d2657b1f0292 |
completed | April 10, 2026, 5:25 a.m. |
| NER | Named-entity recognition | batch_69e452d2f79881909556894728e255ab |
completed | April 19, 2026, 3:58 a.m. |
Created at: April 10, 2026, 5:49 a.m.