Triple

T17521738
Position Surface form Disambiguated ID Type / Status
Subject Bioconductor E426691 entity
Predicate hasComponent P35 FINISHED
Object BiocNeighbors package NE NERFINISHED

How this triple was built (3 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: BiocNeighbors package | Statement: [Bioconductor, hasComponent, BiocNeighbors package]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: BiocNeighbors package
Context triple: [Bioconductor, hasComponent, BiocNeighbors package]
  • A. KNN
    KNN (k-nearest neighbors) is a simple, non-parametric machine learning algorithm used for classification and regression by predicting labels based on the closest training examples in the feature space.
  • B. Mahalanobis distance
    Mahalanobis distance is a multivariate measure of the distance between a point and a distribution (or between distributions) that accounts for correlations between variables via the covariance matrix.
  • C. von Neumann neighborhood
    The von Neumann neighborhood is a grid-based notion of adjacency in cellular automata and lattice models where each cell interacts only with the four orthogonally adjacent cells (up, down, left, right).
  • D. Bhattacharyya coefficient
    The Bhattacharyya coefficient is a statistical measure of similarity between two probability distributions, often used to quantify their overlap in fields like pattern recognition and signal processing.
  • E. DBSCAN algorithm
    The DBSCAN algorithm is a density-based clustering method in data mining that groups together closely packed points while marking points in low-density regions as outliers.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: BiocNeighbors package
Target entity description: The BiocNeighbors package is a Bioconductor tool that provides efficient nearest-neighbor search methods for high-dimensional biological data analysis in R.
  • A. KNN
    KNN (k-nearest neighbors) is a simple, non-parametric machine learning algorithm used for classification and regression by predicting labels based on the closest training examples in the feature space.
  • B. Mahalanobis distance
    Mahalanobis distance is a multivariate measure of the distance between a point and a distribution (or between distributions) that accounts for correlations between variables via the covariance matrix.
  • C. von Neumann neighborhood
    The von Neumann neighborhood is a grid-based notion of adjacency in cellular automata and lattice models where each cell interacts only with the four orthogonally adjacent cells (up, down, left, right).
  • D. Bhattacharyya coefficient
    The Bhattacharyya coefficient is a statistical measure of similarity between two probability distributions, often used to quantify their overlap in fields like pattern recognition and signal processing.
  • E. DBSCAN algorithm
    The DBSCAN algorithm is a density-based clustering method in data mining that groups together closely packed points while marking points in low-density regions as outliers.
  • F. None of above. chosen

Provenance (2 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d889de677081909b22d2657b1f0292 completed April 10, 2026, 5:25 a.m.
NER Named-entity recognition batch_69e452d2f79881909556894728e255ab completed April 19, 2026, 3:58 a.m.
Created at: April 10, 2026, 5:49 a.m.