Triple
T17521709
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Bioconductor |
E426691
|
entity |
| Predicate | hasComponent |
P35
|
FINISHED |
| Object | AnnotationHub |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: AnnotationHub | Statement: [Bioconductor, hasComponent, AnnotationHub]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: AnnotationHub Context triple: [Bioconductor, hasComponent, AnnotationHub]
-
A.
Dataverse
Dataverse is Microsoft's cloud-based data platform that securely stores, manages, and structures business data for use across Power Platform applications and services.
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
GEO DataSets
GEO DataSets is a public NCBI repository that organizes and provides access to curated gene expression and other functional genomics experiment data.
-
D.
NHM Commons
NHM Commons is a public gathering and exhibition space associated with the Natural History Museums of Los Angeles County, designed to host community programs, events, and educational experiences.
-
E.
Harvard Dataverse
Harvard Dataverse is a research data repository platform that enables scholars to share, publish, and preserve datasets, primarily used by the academic community.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: AnnotationHub Target entity description: AnnotationHub is a Bioconductor resource that provides programmatic access to a curated collection of genomic annotation datasets for bioinformatics analyses in R.
-
A.
Dataverse
Dataverse is Microsoft's cloud-based data platform that securely stores, manages, and structures business data for use across Power Platform applications and services.
-
B.
NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
-
C.
GEO DataSets
GEO DataSets is a public NCBI repository that organizes and provides access to curated gene expression and other functional genomics experiment data.
-
D.
NHM Commons
NHM Commons is a public gathering and exhibition space associated with the Natural History Museums of Los Angeles County, designed to host community programs, events, and educational experiences.
-
E.
Harvard Dataverse
Harvard Dataverse is a research data repository platform that enables scholars to share, publish, and preserve datasets, primarily used by the academic community.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d889de677081909b22d2657b1f0292 |
completed | April 10, 2026, 5:25 a.m. |
| NER | Named-entity recognition | batch_69e452d2f79881909556894728e255ab |
completed | April 19, 2026, 3:58 a.m. |
Created at: April 10, 2026, 5:49 a.m.