Triple
T17521701
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Bioconductor |
E426691
|
entity |
| Predicate | hasComponent |
P35
|
FINISHED |
| Object | Bioconductor Docker images |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Bioconductor Docker images | Statement: [Bioconductor, hasComponent, Bioconductor Docker images]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Bioconductor Docker images Context triple: [Bioconductor, hasComponent, Bioconductor Docker images]
-
A.
Bioconductor
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
B.
Docker
Docker is an open-source platform that uses containerization to package, distribute, and run applications consistently across different computing environments.
-
C.
GitHub Container Registry
GitHub Container Registry is a GitHub-hosted service for storing, managing, and distributing container images and related artifacts integrated with GitHub’s developer workflows.
-
D.
Genome Data Viewer
Genome Data Viewer is an NCBI web-based genome browser that allows users to visualize, explore, and analyze annotated genomic sequences and features.
-
E.
OncoAnalytics
OncoAnalytics is a data and analytics platform by Flatiron Health that provides real-world oncology insights to support cancer research and clinical decision-making.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Bioconductor Docker images Target entity description: Bioconductor Docker images are pre-built container environments that bundle the Bioconductor ecosystem with R and required system dependencies to enable reproducible and portable bioinformatics workflows.
-
A.
Bioconductor
chosen
Bioconductor is an open-source project that provides R packages and tools for the analysis and comprehension of high-throughput genomic and biological data.
-
B.
Docker
Docker is an open-source platform that uses containerization to package, distribute, and run applications consistently across different computing environments.
-
C.
GitHub Container Registry
GitHub Container Registry is a GitHub-hosted service for storing, managing, and distributing container images and related artifacts integrated with GitHub’s developer workflows.
-
D.
Genome Data Viewer
Genome Data Viewer is an NCBI web-based genome browser that allows users to visualize, explore, and analyze annotated genomic sequences and features.
-
E.
OncoAnalytics
OncoAnalytics is a data and analytics platform by Flatiron Health that provides real-world oncology insights to support cancer research and clinical decision-making.
- F. None of above.
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d889de677081909b22d2657b1f0292 |
completed | April 10, 2026, 5:25 a.m. |
| NER | Named-entity recognition | batch_69e452d2f79881909556894728e255ab |
completed | April 19, 2026, 3:58 a.m. |
Created at: April 10, 2026, 5:49 a.m.