Triple
T16318662
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Caenorhabditis Genetics Center |
E396234
|
entity |
| Predicate | relatedTo |
P37
|
FINISHED |
| Object |
WormBase
WormBase is a comprehensive online database and research resource focused on the genetics, genomics, and biology of the nematode Caenorhabditis elegans and related species.
|
E1207036
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: WormBase | Statement: [Caenorhabditis Genetics Center, relatedTo, WormBase]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: WormBase Context triple: [Caenorhabditis Genetics Center, relatedTo, WormBase]
-
A.
FlyBase
FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
-
B.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
-
C.
Caenorhabditis elegans
Caenorhabditis elegans is a small, transparent roundworm widely used as a model organism in biology and genetics due to its simple anatomy, fully mapped cell lineage, and well-characterized nervous system.
-
D.
Caenorhabditis
Caenorhabditis is a genus of small, free-living nematode worms widely used as model organisms in biological and genetic research.
-
E.
UniGene database
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: WormBase Triple: [Caenorhabditis Genetics Center, relatedTo, WormBase]
Generated description
WormBase is a comprehensive online database and research resource focused on the genetics, genomics, and biology of the nematode Caenorhabditis elegans and related species.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: WormBase Target entity description: WormBase is a comprehensive online database and research resource focused on the genetics, genomics, and biology of the nematode Caenorhabditis elegans and related species.
-
A.
FlyBase
FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
-
B.
Ensembl
Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
-
C.
Caenorhabditis elegans
Caenorhabditis elegans is a small, transparent roundworm widely used as a model organism in biology and genetics due to its simple anatomy, fully mapped cell lineage, and well-characterized nervous system.
-
D.
Caenorhabditis
Caenorhabditis is a genus of small, free-living nematode worms widely used as model organisms in biological and genetic research.
-
E.
UniGene database
The UniGene database is a now-retired NCBI resource that organized expressed sequence tags and other gene-oriented sequence data into non-redundant clusters representing unique genes in a given organism.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d87f255b788190a400eba031dd85d8 |
completed | April 10, 2026, 4:40 a.m. |
| NER | Named-entity recognition | batch_69e296b3e3e081908a996b3e57ca4e32 |
completed | April 17, 2026, 8:23 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a002606f0e0819081f50dae9e6b7a0d |
completed | May 10, 2026, 6:30 a.m. |
| NEDg | Description generation | batch_6a00275e44d481909bed62779ea9a0d7 |
completed | May 10, 2026, 6:36 a.m. |
| NED2 | Entity disambiguation (via description) | batch_6a0027f99d948190b22812f0c9a2c0ff |
completed | May 10, 2026, 6:38 a.m. |
Created at: April 10, 2026, 5:06 a.m.