Triple
T16318598
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Escherichia coli OP50 |
E396233
|
entity |
| Predicate | isNonPathogenicFor |
P99745
|
FINISHED |
| Object | Caenorhabditis elegans |
E92409
|
NE FINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Caenorhabditis elegans | Statement: [Escherichia coli OP50, isNonPathogenicFor, Caenorhabditis elegans]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Caenorhabditis elegans Context triple: [Escherichia coli OP50, isNonPathogenicFor, Caenorhabditis elegans]
-
A.
Caenorhabditis elegans
chosen
Caenorhabditis elegans is a small, transparent roundworm widely used as a model organism in biology and genetics due to its simple anatomy, fully mapped cell lineage, and well-characterized nervous system.
-
B.
Caenorhabditis
Caenorhabditis is a genus of small, free-living nematode worms widely used as model organisms in biological and genetic research.
-
C.
Caenorhabditis briggsae
Caenorhabditis briggsae is a free-living nematode widely used as a model organism in genetics and developmental biology, closely related to the better-known Caenorhabditis elegans.
-
D.
Caenorhabditis tropicalis
Caenorhabditis tropicalis is a species of free-living nematode used as a model organism in genetics and developmental biology, closely related to the well-studied Caenorhabditis elegans.
-
E.
Caenorhabditis brenneri
Caenorhabditis brenneri is a free-living nematode species closely related to the model organism C. elegans and used in studies of evolution, genetics, and development.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: isNonPathogenicFor Context triple: [Escherichia coli OP50, isNonPathogenicFor, Caenorhabditis elegans]
-
A.
nonPathogenicMember
chosen
Indicates that one entity is a member of a group or species that does not cause disease in the other entity or in a specified host.
-
B.
isPathogenOf
Indicates that one entity is a disease-causing agent (pathogen) that infects or causes illness in another entity.
-
C.
pathogenicityToHumans
Indicates that an entity has the capacity to cause disease or harmful health effects in humans.
-
D.
includesPathogensOf
Indicates that one entity contains or encompasses the pathogens that are associated with or originate from another entity.
-
E.
becomesPathogenicUnder
Indicates that an entity transitions into a disease-causing or harmful state when exposed to a specified condition or factor.
- F. None of above.
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d87f255b788190a400eba031dd85d8 |
completed | April 10, 2026, 4:40 a.m. |
| NER | Named-entity recognition | batch_69e296b3e3e081908a996b3e57ca4e32 |
completed | April 17, 2026, 8:23 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_6a011b31b3b4819095d0c24ee471e2a9 |
completed | May 10, 2026, 11:56 p.m. |
| PD | Predicate disambiguation | batch_69e219fc72c881909d452274e7af8238 |
completed | April 17, 2026, 11:31 a.m. |
Created at: April 10, 2026, 5:06 a.m.