Triple
T14427068
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | pPCP1 |
E357723
|
entity |
| Predicate | encodes |
P14248
|
FINISHED |
| Object |
outer membrane protease Pla
Outer membrane protease Pla is a surface-exposed protease of Yersinia pestis that activates host plasminogen and contributes critically to the bacterium’s virulence and ability to disseminate in the host.
|
E1099878
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: outer membrane protease Pla | Statement: [pPCP1, encodes, outer membrane protease Pla]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: outer membrane protease Pla Context triple: [pPCP1, encodes, outer membrane protease Pla]
-
A.
Yersinia outer proteins
Yersinia outer proteins are a group of effector proteins secreted by Yersinia bacteria via a type III secretion system that disrupt host immune responses and promote infection.
-
B.
Photorhabdus
Photorhabdus is a genus of bioluminescent, insect-pathogenic bacteria that live in symbiosis with nematodes and are used as biological control agents.
-
C.
Psychrobacter
Psychrobacter is a genus of cold-adapted, often psychrophilic bacteria commonly found in low-temperature environments such as polar regions, deep seas, and refrigerated foods.
-
D.
Xenorhabdus
Xenorhabdus is a genus of Gram-negative bacteria known for its symbiotic association with entomopathogenic nematodes and its role in killing insect hosts.
-
E.
Pectobacterium
Pectobacterium is a genus of plant-pathogenic bacteria known for causing soft rot diseases in a wide range of crops by degrading plant cell walls.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: outer membrane protease Pla Triple: [pPCP1, encodes, outer membrane protease Pla]
Generated description
Outer membrane protease Pla is a surface-exposed protease of Yersinia pestis that activates host plasminogen and contributes critically to the bacterium’s virulence and ability to disseminate in the host.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: outer membrane protease Pla Target entity description: Outer membrane protease Pla is a surface-exposed protease of Yersinia pestis that activates host plasminogen and contributes critically to the bacterium’s virulence and ability to disseminate in the host.
-
A.
Yersinia outer proteins
Yersinia outer proteins are a group of effector proteins secreted by Yersinia bacteria via a type III secretion system that disrupt host immune responses and promote infection.
-
B.
Photorhabdus
Photorhabdus is a genus of bioluminescent, insect-pathogenic bacteria that live in symbiosis with nematodes and are used as biological control agents.
-
C.
Psychrobacter
Psychrobacter is a genus of cold-adapted, often psychrophilic bacteria commonly found in low-temperature environments such as polar regions, deep seas, and refrigerated foods.
-
D.
Xenorhabdus
Xenorhabdus is a genus of Gram-negative bacteria known for its symbiotic association with entomopathogenic nematodes and its role in killing insect hosts.
-
E.
Pectobacterium
Pectobacterium is a genus of plant-pathogenic bacteria known for causing soft rot diseases in a wide range of crops by degrading plant cell walls.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8279402a88190821ffa39ae15bccf |
completed | April 9, 2026, 10:26 p.m. |
| NER | Named-entity recognition | batch_69de911398f08190be85bc0a8bef6b1b |
completed | April 14, 2026, 7:10 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69fd5bcfa1d88190b59cefd3e305f55f |
completed | May 8, 2026, 3:43 a.m. |
| NEDg | Description generation | batch_69fd5d6af9ac8190a37f11b0f8a1db0f |
completed | May 8, 2026, 3:50 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69fd5df48f7481909764bc4e23c0b04a |
completed | May 8, 2026, 3:52 a.m. |
Created at: April 10, 2026, 1:18 a.m.