Triple

T11466782

Position	Surface form	Disambiguated ID	Type / Status
Subject	Mycobacterium tuberculosis complex	`E271799`	entity
Predicate	containsTaxon	`P9413`	FINISHED
Object	Mycobacterium mungi Mycobacterium mungi is a pathogenic mycobacterial species within the Mycobacterium tuberculosis complex that infects banded mongooses in sub-Saharan Africa, causing a tuberculosis-like disease.	`E945184`	NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini

Instruction

Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).

Input

Phrase: Mycobacterium mungi | Statement: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium mungi]

NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07

Target entity: Mycobacterium mungi
Context triple: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium mungi]

A. Mycobacterium canettii
Mycobacterium canettii is a rare, smooth-colony–forming member of the Mycobacterium tuberculosis complex that causes tuberculosis-like disease in humans and is considered evolutionarily ancestral to typical M. tuberculosis strains.
B. Mycobacterium orygis
Mycobacterium orygis is a member of the Mycobacterium tuberculosis complex that primarily infects animals such as oryx and other wildlife but can also cause tuberculosis in humans.
C. Mycobacterium pinnipedii
Mycobacterium pinnipedii is a pathogenic mycobacterial species within the Mycobacterium tuberculosis complex that primarily infects seals and other pinnipeds, occasionally causing zoonotic tuberculosis in humans.
D. Mycobacterium marinum
Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
E. Mycobacterium kansasii
Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
F. None of above. chosen
G. Unsure - the case is ambiguous/there is not enough information to decide.

NEDg Description generation gpt-5.1

Instruction

Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"

Input

Entity: Mycobacterium mungi
Triple: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium mungi]

Generated description

Mycobacterium mungi is a pathogenic mycobacterial species within the Mycobacterium tuberculosis complex that infects banded mongooses in sub-Saharan Africa, causing a tuberculosis-like disease.

NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07

Target entity: Mycobacterium mungi
Target entity description: Mycobacterium mungi is a pathogenic mycobacterial species within the Mycobacterium tuberculosis complex that infects banded mongooses in sub-Saharan Africa, causing a tuberculosis-like disease.

A. Mycobacterium canettii
Mycobacterium canettii is a rare, smooth-colony–forming member of the Mycobacterium tuberculosis complex that causes tuberculosis-like disease in humans and is considered evolutionarily ancestral to typical M. tuberculosis strains.
B. Mycobacterium orygis
Mycobacterium orygis is a member of the Mycobacterium tuberculosis complex that primarily infects animals such as oryx and other wildlife but can also cause tuberculosis in humans.
C. Mycobacterium pinnipedii
Mycobacterium pinnipedii is a pathogenic mycobacterial species within the Mycobacterium tuberculosis complex that primarily infects seals and other pinnipeds, occasionally causing zoonotic tuberculosis in humans.
D. Mycobacterium marinum
Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
E. Mycobacterium kansasii
Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step	Stage	Batch ID	Status	When
creating	Elicitation	`batch_69d6aae0c8d881908a5a360c0be3242e`	completed	April 8, 2026, 7:22 p.m.
NER	Named-entity recognition	`batch_69d822f5eb988190b309b8e309f6d1a5`	completed	April 9, 2026, 10:06 p.m.
NED1	Entity disambiguation (via context triple)	`batch_69f08f409d348190ba97ed5cf34d755a`	completed	April 28, 2026, 10:43 a.m.
NEDg	Description generation	`batch_69f0bd36673881908530b68e496c3d2e`	completed	April 28, 2026, 1:59 p.m.
NED2	Entity disambiguation (via description)	`batch_69f0eec1f5d081908624fe2a93995fe5`	completed	April 28, 2026, 5:30 p.m.

Created at: April 8, 2026, 9:35 p.m.