Triple

T11466781
Position Surface form Disambiguated ID Type / Status
Subject Mycobacterium tuberculosis complex E271799 entity
Predicate containsTaxon P9413 FINISHED
Object Mycobacterium orygis
Mycobacterium orygis is a member of the Mycobacterium tuberculosis complex that primarily infects animals such as oryx and other wildlife but can also cause tuberculosis in humans.
 E944045 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Mycobacterium orygis | Statement: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium orygis]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: Mycobacterium orygis
Context triple: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium orygis]
  • A. Mycobacterium canettii
    Mycobacterium canettii is a rare, smooth-colony–forming member of the Mycobacterium tuberculosis complex that causes tuberculosis-like disease in humans and is considered evolutionarily ancestral to typical M. tuberculosis strains.
  • B. Mycobacterium kansasii
    Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
  • C. Mycobacterium
    Mycobacterium is a genus of rod-shaped, often slow-growing bacteria that includes important human pathogens such as the causative agents of tuberculosis and leprosy.
  • D. Mycobacterium fortuitum
    Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
  • E. Mycobacterium chelonae
    Mycobacterium chelonae is a rapidly growing nontuberculous mycobacterial species that can cause skin, soft tissue, and ocular infections in humans, often associated with trauma or medical procedures.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Mycobacterium orygis
Triple: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium orygis]
Generated description
Mycobacterium orygis is a member of the Mycobacterium tuberculosis complex that primarily infects animals such as oryx and other wildlife but can also cause tuberculosis in humans.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: Mycobacterium orygis
Target entity description: Mycobacterium orygis is a member of the Mycobacterium tuberculosis complex that primarily infects animals such as oryx and other wildlife but can also cause tuberculosis in humans.
  • A. Mycobacterium canettii
    Mycobacterium canettii is a rare, smooth-colony–forming member of the Mycobacterium tuberculosis complex that causes tuberculosis-like disease in humans and is considered evolutionarily ancestral to typical M. tuberculosis strains.
  • B. Mycobacterium kansasii
    Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
  • C. Mycobacterium
    Mycobacterium is a genus of rod-shaped, often slow-growing bacteria that includes important human pathogens such as the causative agents of tuberculosis and leprosy.
  • D. Mycobacterium fortuitum
    Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
  • E. Mycobacterium chelonae
    Mycobacterium chelonae is a rapidly growing nontuberculous mycobacterial species that can cause skin, soft tissue, and ocular infections in humans, often associated with trauma or medical procedures.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d6aae0c8d881908a5a360c0be3242e completed April 8, 2026, 7:22 p.m.
NER Named-entity recognition batch_69d822f5eb988190b309b8e309f6d1a5 completed April 9, 2026, 10:06 p.m.
NED1 Entity disambiguation (via context triple) batch_69f018963218819097771032a88688af completed April 28, 2026, 2:16 a.m.
NEDg Description generation batch_69f01d7ab930819095eaae226ab55b80 completed April 28, 2026, 2:37 a.m.
NED2 Entity disambiguation (via description) batch_69f043ddbfe481908e0c439dbd3e944f completed April 28, 2026, 5:21 a.m.
Created at: April 8, 2026, 9:35 p.m.