Triple
T11466780
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Mycobacterium tuberculosis complex |
E271799
|
entity |
| Predicate | containsTaxon |
P9413
|
FINISHED |
| Object |
Mycobacterium pinnipedii
Mycobacterium pinnipedii is a pathogenic mycobacterial species within the Mycobacterium tuberculosis complex that primarily infects seals and other pinnipeds, occasionally causing zoonotic tuberculosis in humans.
|
E941308
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Mycobacterium pinnipedii | Statement: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium pinnipedii]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Mycobacterium pinnipedii Context triple: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium pinnipedii]
-
A.
Mycobacterium marinum
Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
-
B.
Mycobacterium canettii
Mycobacterium canettii is a rare, smooth-colony–forming member of the Mycobacterium tuberculosis complex that causes tuberculosis-like disease in humans and is considered evolutionarily ancestral to typical M. tuberculosis strains.
-
C.
Mycobacterium bovis
Mycobacterium bovis is a slow-growing, pathogenic bacterium that primarily causes tuberculosis in cattle and can infect humans, and it serves as the basis for the widely used BCG vaccine.
-
D.
Mycobacterium chelonae
Mycobacterium chelonae is a rapidly growing nontuberculous mycobacterial species that can cause skin, soft tissue, and ocular infections in humans, often associated with trauma or medical procedures.
-
E.
Mycobacterium fortuitum
Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Mycobacterium pinnipedii Triple: [Mycobacterium tuberculosis complex, containsTaxon, Mycobacterium pinnipedii]
Generated description
Mycobacterium pinnipedii is a pathogenic mycobacterial species within the Mycobacterium tuberculosis complex that primarily infects seals and other pinnipeds, occasionally causing zoonotic tuberculosis in humans.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Mycobacterium pinnipedii Target entity description: Mycobacterium pinnipedii is a pathogenic mycobacterial species within the Mycobacterium tuberculosis complex that primarily infects seals and other pinnipeds, occasionally causing zoonotic tuberculosis in humans.
-
A.
Mycobacterium marinum
Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
-
B.
Mycobacterium canettii
Mycobacterium canettii is a rare, smooth-colony–forming member of the Mycobacterium tuberculosis complex that causes tuberculosis-like disease in humans and is considered evolutionarily ancestral to typical M. tuberculosis strains.
-
C.
Mycobacterium bovis
Mycobacterium bovis is a slow-growing, pathogenic bacterium that primarily causes tuberculosis in cattle and can infect humans, and it serves as the basis for the widely used BCG vaccine.
-
D.
Mycobacterium chelonae
Mycobacterium chelonae is a rapidly growing nontuberculous mycobacterial species that can cause skin, soft tissue, and ocular infections in humans, often associated with trauma or medical procedures.
-
E.
Mycobacterium fortuitum
Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aae0c8d881908a5a360c0be3242e |
completed | April 8, 2026, 7:22 p.m. |
| NER | Named-entity recognition | batch_69d822f5eb988190b309b8e309f6d1a5 |
completed | April 9, 2026, 10:06 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ef8201715c819090cbd7c1e3068bdd |
completed | April 27, 2026, 3:34 p.m. |
| NEDg | Description generation | batch_69ef96ab29d48190b225504856007384 |
completed | April 27, 2026, 5:02 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69efd64bfa7081909715aa64d80fadf3 |
completed | April 27, 2026, 9:34 p.m. |
Created at: April 8, 2026, 9:35 p.m.