Triple

T11466500
Position Surface form Disambiguated ID Type / Status
Subject Mycobacterium E271793 entity
Predicate includesSpecies P10920 FINISHED
Object Mycobacterium chelonae
Mycobacterium chelonae is a rapidly growing nontuberculous mycobacterial species that can cause skin, soft tissue, and ocular infections in humans, often associated with trauma or medical procedures.
 E933153 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Mycobacterium chelonae | Statement: [Mycobacterium, includesSpecies, Mycobacterium chelonae]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: Mycobacterium chelonae
Context triple: [Mycobacterium, includesSpecies, Mycobacterium chelonae]
  • A. Mycobacterium fortuitum
    Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
  • B. Mycobacterium marinum
    Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
  • C. Mycobacterium kansasii
    Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
  • D. Rhodococcus
    Rhodococcus is a genus of Gram-positive, often soil-dwelling bacteria known for their ability to degrade a wide range of organic compounds, including environmental pollutants.
  • E. Mycobacterium abscessus
    Mycobacterium abscessus is a rapidly growing, opportunistic nontuberculous mycobacterial species that commonly causes difficult-to-treat lung, skin, and soft tissue infections, particularly in individuals with underlying lung disease or weakened immune systems.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Mycobacterium chelonae
Triple: [Mycobacterium, includesSpecies, Mycobacterium chelonae]
Generated description
Mycobacterium chelonae is a rapidly growing nontuberculous mycobacterial species that can cause skin, soft tissue, and ocular infections in humans, often associated with trauma or medical procedures.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: Mycobacterium chelonae
Target entity description: Mycobacterium chelonae is a rapidly growing nontuberculous mycobacterial species that can cause skin, soft tissue, and ocular infections in humans, often associated with trauma or medical procedures.
  • A. Mycobacterium fortuitum
    Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
  • B. Mycobacterium marinum
    Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
  • C. Mycobacterium kansasii
    Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
  • D. Rhodococcus
    Rhodococcus is a genus of Gram-positive, often soil-dwelling bacteria known for their ability to degrade a wide range of organic compounds, including environmental pollutants.
  • E. Mycobacterium abscessus
    Mycobacterium abscessus is a rapidly growing, opportunistic nontuberculous mycobacterial species that commonly causes difficult-to-treat lung, skin, and soft tissue infections, particularly in individuals with underlying lung disease or weakened immune systems.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d6aae0c8d881908a5a360c0be3242e completed April 8, 2026, 7:22 p.m.
NER Named-entity recognition batch_69d822f5eb988190b309b8e309f6d1a5 completed April 9, 2026, 10:06 p.m.
NED1 Entity disambiguation (via context triple) batch_69e6e7800ca881909c1816a74b3b8f19 completed April 21, 2026, 2:57 a.m.
NEDg Description generation batch_69e6ef8fca248190bc2fdd8457258874 completed April 21, 2026, 3:31 a.m.
NED2 Entity disambiguation (via description) batch_69e6f8ec88e88190bfa21c2d06d67bd8 completed April 21, 2026, 4:11 a.m.
Created at: April 8, 2026, 9:35 p.m.