Triple
T11466499
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Mycobacterium |
E271793
|
entity |
| Predicate | includesSpecies |
P10920
|
FINISHED |
| Object |
Mycobacterium fortuitum
Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
|
E931741
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Mycobacterium fortuitum | Statement: [Mycobacterium, includesSpecies, Mycobacterium fortuitum]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Mycobacterium fortuitum Context triple: [Mycobacterium, includesSpecies, Mycobacterium fortuitum]
-
A.
Mycobacterium kansasii
Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
-
B.
Mycobacterium marinum
Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
-
C.
Mycobacterium abscessus
Mycobacterium abscessus is a rapidly growing, opportunistic nontuberculous mycobacterial species that commonly causes difficult-to-treat lung, skin, and soft tissue infections, particularly in individuals with underlying lung disease or weakened immune systems.
-
D.
Rhodococcus
Rhodococcus is a genus of Gram-positive, often soil-dwelling bacteria known for their ability to degrade a wide range of organic compounds, including environmental pollutants.
-
E.
Mycobacterium ulcerans
Mycobacterium ulcerans is a slow-growing environmental mycobacterium that causes Buruli ulcer, a chronic necrotizing skin and soft tissue infection in humans.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Mycobacterium fortuitum Triple: [Mycobacterium, includesSpecies, Mycobacterium fortuitum]
Generated description
Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Mycobacterium fortuitum Target entity description: Mycobacterium fortuitum is a rapidly growing, nontuberculous mycobacterial species that can cause opportunistic skin, soft tissue, and device-related infections in humans.
-
A.
Mycobacterium kansasii
Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
-
B.
Mycobacterium marinum
Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
-
C.
Mycobacterium abscessus
Mycobacterium abscessus is a rapidly growing, opportunistic nontuberculous mycobacterial species that commonly causes difficult-to-treat lung, skin, and soft tissue infections, particularly in individuals with underlying lung disease or weakened immune systems.
-
D.
Rhodococcus
Rhodococcus is a genus of Gram-positive, often soil-dwelling bacteria known for their ability to degrade a wide range of organic compounds, including environmental pollutants.
-
E.
Mycobacterium ulcerans
Mycobacterium ulcerans is a slow-growing environmental mycobacterium that causes Buruli ulcer, a chronic necrotizing skin and soft tissue infection in humans.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aae0c8d881908a5a360c0be3242e |
completed | April 8, 2026, 7:22 p.m. |
| NER | Named-entity recognition | batch_69d822f5eb988190b309b8e309f6d1a5 |
completed | April 9, 2026, 10:06 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69e684f59e2481909e96129e28c961ea |
completed | April 20, 2026, 7:56 p.m. |
| NEDg | Description generation | batch_69e68ce8d7988190a0dd3abe5f2afc97 |
completed | April 20, 2026, 8:30 p.m. |
| NED2 | Entity disambiguation (via description) | batch_69e6b7a31b4081909b06bc9b6d0a1617 |
completed | April 20, 2026, 11:32 p.m. |
Created at: April 8, 2026, 9:35 p.m.