Triple
T11466498
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Mycobacterium |
E271793
|
entity |
| Predicate | includesSpecies |
P10920
|
FINISHED |
| Object |
Mycobacterium abscessus
Mycobacterium abscessus is a rapidly growing, opportunistic nontuberculous mycobacterial species that commonly causes difficult-to-treat lung, skin, and soft tissue infections, particularly in individuals with underlying lung disease or weakened immune systems.
|
E928387
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Mycobacterium abscessus | Statement: [Mycobacterium, includesSpecies, Mycobacterium abscessus]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Mycobacterium abscessus Context triple: [Mycobacterium, includesSpecies, Mycobacterium abscessus]
-
A.
Mycobacterium kansasii
Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
-
B.
Mycobacterium ulcerans
Mycobacterium ulcerans is a slow-growing environmental mycobacterium that causes Buruli ulcer, a chronic necrotizing skin and soft tissue infection in humans.
-
C.
Rhodococcus
Rhodococcus is a genus of Gram-positive, often soil-dwelling bacteria known for their ability to degrade a wide range of organic compounds, including environmental pollutants.
-
D.
Mycobacterium
Mycobacterium is a genus of rod-shaped, often slow-growing bacteria that includes important human pathogens such as the causative agents of tuberculosis and leprosy.
-
E.
Mycobacterium tuberculosis
Mycobacterium tuberculosis is the pathogenic bacterial species that causes most cases of human tuberculosis, primarily affecting the lungs and spreading through airborne transmission.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Mycobacterium abscessus Triple: [Mycobacterium, includesSpecies, Mycobacterium abscessus]
Generated description
Mycobacterium abscessus is a rapidly growing, opportunistic nontuberculous mycobacterial species that commonly causes difficult-to-treat lung, skin, and soft tissue infections, particularly in individuals with underlying lung disease or weakened immune systems.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Mycobacterium abscessus Target entity description: Mycobacterium abscessus is a rapidly growing, opportunistic nontuberculous mycobacterial species that commonly causes difficult-to-treat lung, skin, and soft tissue infections, particularly in individuals with underlying lung disease or weakened immune systems.
-
A.
Mycobacterium kansasii
Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
-
B.
Mycobacterium ulcerans
Mycobacterium ulcerans is a slow-growing environmental mycobacterium that causes Buruli ulcer, a chronic necrotizing skin and soft tissue infection in humans.
-
C.
Rhodococcus
Rhodococcus is a genus of Gram-positive, often soil-dwelling bacteria known for their ability to degrade a wide range of organic compounds, including environmental pollutants.
-
D.
Mycobacterium
Mycobacterium is a genus of rod-shaped, often slow-growing bacteria that includes important human pathogens such as the causative agents of tuberculosis and leprosy.
-
E.
Mycobacterium tuberculosis
Mycobacterium tuberculosis is the pathogenic bacterial species that causes most cases of human tuberculosis, primarily affecting the lungs and spreading through airborne transmission.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aae0c8d881908a5a360c0be3242e |
completed | April 8, 2026, 7:22 p.m. |
| NER | Named-entity recognition | batch_69d822f5eb988190b309b8e309f6d1a5 |
completed | April 9, 2026, 10:06 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69e60415f6ac8190ad81ed0ef0a30e12 |
completed | April 20, 2026, 10:46 a.m. |
| NEDg | Description generation | batch_69e610a07bf881908de79850edb9576f |
completed | April 20, 2026, 11:40 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69e617fdaaa88190a1860fb00309596b |
completed | April 20, 2026, 12:11 p.m. |
Created at: April 8, 2026, 9:35 p.m.