Triple

T11466496
Position Surface form Disambiguated ID Type / Status
Subject Mycobacterium E271793 entity
Predicate includesSpecies P10920 FINISHED
Object Mycobacterium marinum
Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
E929610 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Mycobacterium marinum | Statement: [Mycobacterium, includesSpecies, Mycobacterium marinum]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Mycobacterium marinum
Context triple: [Mycobacterium, includesSpecies, Mycobacterium marinum]
  • A. Mycobacterium ulcerans
    Mycobacterium ulcerans is a slow-growing environmental mycobacterium that causes Buruli ulcer, a chronic necrotizing skin and soft tissue infection in humans.
  • B. Mycobacterium kansasii
    Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
  • C. Mycobacterium
    Mycobacterium is a genus of rod-shaped, often slow-growing bacteria that includes important human pathogens such as the causative agents of tuberculosis and leprosy.
  • D. Rhodococcus
    Rhodococcus is a genus of Gram-positive, often soil-dwelling bacteria known for their ability to degrade a wide range of organic compounds, including environmental pollutants.
  • E. Mycobacterium bovis
    Mycobacterium bovis is a slow-growing, pathogenic bacterium that primarily causes tuberculosis in cattle and can infect humans, and it serves as the basis for the widely used BCG vaccine.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Mycobacterium marinum
Triple: [Mycobacterium, includesSpecies, Mycobacterium marinum]
Generated description
Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Mycobacterium marinum
Target entity description: Mycobacterium marinum is a waterborne, slow-growing, non-tuberculous mycobacterial species that commonly infects fish and can cause skin and soft tissue infections in humans, especially after exposure to aquariums or natural bodies of water.
  • A. Mycobacterium ulcerans
    Mycobacterium ulcerans is a slow-growing environmental mycobacterium that causes Buruli ulcer, a chronic necrotizing skin and soft tissue infection in humans.
  • B. Mycobacterium kansasii
    Mycobacterium kansasii is a slow-growing, non-tuberculous mycobacterial species that commonly causes pulmonary infections resembling tuberculosis, particularly in immunocompromised individuals.
  • C. Mycobacterium
    Mycobacterium is a genus of rod-shaped, often slow-growing bacteria that includes important human pathogens such as the causative agents of tuberculosis and leprosy.
  • D. Rhodococcus
    Rhodococcus is a genus of Gram-positive, often soil-dwelling bacteria known for their ability to degrade a wide range of organic compounds, including environmental pollutants.
  • E. Mycobacterium bovis
    Mycobacterium bovis is a slow-growing, pathogenic bacterium that primarily causes tuberculosis in cattle and can infect humans, and it serves as the basis for the widely used BCG vaccine.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d6aae0c8d881908a5a360c0be3242e completed April 8, 2026, 7:22 p.m.
NER Named-entity recognition batch_69d822f5eb988190b309b8e309f6d1a5 completed April 9, 2026, 10:06 p.m.
NED1 Entity disambiguation (via context triple) batch_69e6248d0db881909999049356f53ff6 completed April 20, 2026, 1:05 p.m.
NEDg Description generation batch_69e62cf224f881908badcdab6aea1aef completed April 20, 2026, 1:41 p.m.
NED2 Entity disambiguation (via description) batch_69e663ffedfc8190a2b51995c62d1e6b completed April 20, 2026, 5:36 p.m.
Created at: April 8, 2026, 9:35 p.m.