Triple
T11074204
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | DNA ligase |
E261823
|
entity |
| Predicate | ATP-dependentFormTypicallyFoundIn |
P97052
|
FINISHED |
| Object | eukaryotes |
—
|
LITERAL FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: eukaryotes | Statement: [DNA ligase, ATP-dependentFormTypicallyFoundIn, eukaryotes]
PD
Predicate disambiguation
gpt-5-mini-2025-08-07
Target predicate: ATP-dependentFormTypicallyFoundIn Context triple: [DNA ligase, ATP-dependentFormTypicallyFoundIn, eukaryotes]
-
A.
enzymeType
Indicates the specific class or category of enzyme associated with an entity or reaction.
-
B.
bindsNucleotide
Indicates that one entity physically attaches to or associates with a nucleotide molecule.
-
C.
foundInStructure
Indicates that an entity is located within, contained by, or structurally part of another entity or structure.
-
D.
foundInSubstrate
Indicates that something exists, occurs, or is located within a particular substrate or underlying medium.
-
E.
enzymeSystem
Indicates a relationship where an entity functions as, or is part of, a specific enzyme system involved in catalyzing biochemical reactions.
- F. None of above. chosen
Provenance (4 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d6aa9983c08190b0ef61603b69feac |
completed | April 8, 2026, 7:20 p.m. |
| NER | Named-entity recognition | batch_69d7994e32fc8190a6591d9e82b68f75 |
completed | April 9, 2026, 12:19 p.m. |
| PD | Predicate disambiguation | batch_69d74415403c81909778bcd829e8832e |
completed | April 9, 2026, 6:15 a.m. |
| PDg | Predicate description generation | batch_69d750ca52ec8190a559432a5de106fd |
completed | April 9, 2026, 7:10 a.m. |
Created at: April 8, 2026, 9:26 p.m.