UniRef
E736815
UniRef is a set of clustered protein sequence databases derived from UniProt that group similar sequences to reduce redundancy and speed up sequence similarity searches.
Statements (46)
| Predicate | Object |
|---|---|
| instanceOf |
bioinformatics resource
ⓘ
protein sequence database ⓘ |
| accessMethod |
FTP download
ⓘ
programmatic access ⓘ web interface ⓘ |
| aggregationLevel |
100 percent identity clusters
ⓘ
50 percent identity clusters ⓘ 90 percent identity clusters ⓘ |
| clusteringCriterion | sequence identity ⓘ |
| clusteringMethod | sequence clustering ⓘ |
| dataSource |
Swiss-Prot
NERFINISHED
ⓘ
TrEMBL NERFINISHED ⓘ UniParc NERFINISHED ⓘ UniProtKB NERFINISHED ⓘ |
| dataType |
cluster membership information
ⓘ
cluster representative sequence ⓘ protein sequence ⓘ |
| dataUpdateFrequency | synchronized with UniProt releases ⓘ |
| derivedFrom | UniProt NERFINISHED ⓘ |
| domain |
computational biology
ⓘ
proteomics ⓘ |
| hasPart |
UniRef100
NERFINISHED
ⓘ
UniRef50 NERFINISHED ⓘ UniRef90 NERFINISHED ⓘ |
| hasURL | https://www.uniprot.org/help/uniref ⓘ |
| implementedIn | relational database system ⓘ |
| license | free for academic use ⓘ |
| maintainedBy | UniProt Consortium NERFINISHED ⓘ |
| organismCoverage | all taxa in UniProt ⓘ |
| provides |
links to UniProt entries
ⓘ
non-redundant protein sequence sets ⓘ sequence identifiers ⓘ |
| purpose |
reduce sequence redundancy
ⓘ
speed up sequence similarity searches ⓘ |
| relatedTo |
UniMES
NERFINISHED
ⓘ
UniParc NERFINISHED ⓘ UniProtKB NERFINISHED ⓘ |
| supports |
database indexing for similarity search tools
ⓘ
high-throughput sequence analysis pipelines ⓘ |
| typicalUseWith |
BLAST
NERFINISHED
ⓘ
DIAMOND ⓘ HMMER NERFINISHED ⓘ |
| usedFor |
functional annotation transfer
ⓘ
large-scale sequence analysis ⓘ metagenomic analysis ⓘ sequence similarity search ⓘ |
Referenced by (1)
Full triples — surface form annotated when it differs from this entity's canonical label.