modENCODE project
E459329
The modENCODE project is a large-scale genomics initiative aimed at comprehensively identifying and annotating functional elements in model organisms such as Drosophila melanogaster and Caenorhabditis elegans.
Statements (47)
| Predicate | Object |
|---|---|
| instanceOf |
ENCODE-related project
ⓘ
functional genomics initiative ⓘ genomics research project ⓘ |
| abbreviation | modENCODE NERFINISHED ⓘ |
| aim |
to annotate functional elements in Caenorhabditis elegans
ⓘ
to annotate functional elements in Drosophila melanogaster ⓘ to comprehensively identify functional elements in model organism genomes ⓘ |
| contributesTo |
annotation standards for functional genomics
ⓘ
understanding of gene regulation in model organisms ⓘ |
| dataRepository |
NCBI Gene Expression Omnibus
NERFINISHED
ⓘ
UCSC Genome Browser tracks NERFINISHED ⓘ modENCODE Data Coordination Center NERFINISHED ⓘ |
| field |
bioinformatics
ⓘ
functional genomics ⓘ genomics ⓘ |
| focusesOn |
chromatin structure
ⓘ
epigenetic modifications ⓘ functional elements in the genome ⓘ gene expression ⓘ non-coding RNAs ⓘ regulatory elements ⓘ transcription factor binding sites ⓘ |
| fullName | Model Organism Encyclopedia of DNA Elements project NERFINISHED ⓘ |
| geographicScope | international collaboration ⓘ |
| hasCollaborator |
bioinformatics consortia
ⓘ
multiple academic research institutions ⓘ |
| hasOutput |
genome-wide functional annotations for Caenorhabditis elegans
ⓘ
genome-wide functional annotations for Drosophila melanogaster ⓘ publicly available genomic datasets ⓘ |
| hasPublication | Science 2010 modENCODE integrative analysis papers NERFINISHED ⓘ |
| inspiredBy | ENCODE project goals ⓘ |
| partOf | ENCODE consortium ecosystem ⓘ |
| providesResourceFor |
comparative genomics studies
ⓘ
model organism research community ⓘ regulatory network inference ⓘ |
| relatedTo | ENCODE project NERFINISHED ⓘ |
| studiesOrganism |
Caenorhabditis elegans
NERFINISHED
ⓘ
Drosophila melanogaster NERFINISHED ⓘ |
| supportedBy |
National Human Genome Research Institute
NERFINISHED
ⓘ
National Institutes of Health NERFINISHED ⓘ |
| timeFrame | active mainly in late 2000s and early 2010s ⓘ |
| usesMethod |
ChIP-seq
ⓘ
RNA-seq ⓘ comparative genomics ⓘ high-throughput sequencing ⓘ tiling microarrays ⓘ |
| website | http://www.modencode.org/ ⓘ |
Referenced by (1)
Full triples — surface form annotated when it differs from this entity's canonical label.